Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq70 129 6e-25 seq31 122 8e-23 seq6 120 3e-22 seq309 111 2e-19 seq3 104 2e-17 seq120 102 8e-17 seq366 100 3e-16 seq37 91.5 1e-13 seq28 87.8 2e-12 seq542 86.0 6e-12 seq4 86.0 6e-12 >seq70 Length=7483708 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || || ||||| || ||| | ||| ||||| ||||| |||| Sbjct 5585721 GGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGA-TCCTCCAGCTGTTTGC 5585779 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || ||| ||||||||| || |||||| |||||||||| |||||| || Sbjct 5585780 CAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTCTTGGATCTTGGCCT 5585839 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | ||||| || || | |||| ||| ||||| ||||| | Sbjct 5585840 TGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGG 5585899 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 5585900 TCTTCACAAAGATCTGCATG 5585919 >seq31 Length=11202321 Score = 122 bits (134), Expect = 8e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | ||||| ||||||||||| || |||||||| || || Sbjct 8040986 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTA 8041045 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | ||||| |||||||||| || | ||||| | Sbjct 8041046 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 8041105 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||||||||| || || ||||| |||||||| Sbjct 8041106 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140 >seq6 Length=12818899 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||||||||| Sbjct 2580472 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 2580414 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || ||||| || || ||||| ||||||| ||| Sbjct 2580413 TGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGGATCTTTGCCTT 2580354 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || || | ||||| ||| || || || | || Sbjct 2580353 GACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTTACCAGTTAAGGT 2580294 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 2580293 TTTCACGAAGATCTGCAT 2580276 >seq309 Length=1536079 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| || || |||||||| || || || | | | || || |||| Sbjct 714810 ATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCA-TCTTCCAGCT 714752 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || |||| |||||| || ||||| || |||||||| || ||||| Sbjct 714751 GCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCCTGGATCT 714692 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | |||||| | ||| || || |||| |||| |||||| || | Sbjct 714691 TGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCG 714632 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || |||||||||||||| Sbjct 714631 TGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 100 bits (110), Expect = 3e-16 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| || || |||||||| || | || ||| | || || |||| Sbjct 713444 ATGAAGGGTGGACTCCTTTTGAATATTGTATTC----AAAGTACGACCA-TCTTCCAGCT 713390 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || |||| ||||| || ||||| || |||||||| || ||||| Sbjct 713389 GCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCCTGGATCT 713330 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | |||||| | ||| || || |||| |||| |||||| || | Sbjct 713329 TGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCG 713270 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || |||||||||||||| Sbjct 713269 TGAGGGTCTTCACGAAAATCTGCAT 713245 >seq3 Length=5748141 Score = 104 bits (114), Expect = 2e-17 Identities = 146/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || || ||| | | | || | |||||||||| Sbjct 3927325 GGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCA-TCACCCAGCTGCTTGC 3927383 Query 133522 CCGCGTAA-ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || | || |||| ||||||||| || |||||||||||||| || |||||| | Sbjct 3927384 TGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATCTTGACC 3927443 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||| | ||||| | ||||| || || | |||| | | ||||| ||||| Sbjct 3927444 TTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGATGTTCTTGCCTGTCAGG 3927503 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || || || ||||||||| Sbjct 3927504 GTCTTCACAAAGATCTGCATG 3927524 >seq120 Length=4857412 Score = 102 bits (112), Expect = 8e-17 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | | ||||||||||||| || ||||| || || ||| ||||| ||||| Sbjct 3874445 ATGCAAGATGGACTCTTTCTGGATGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTG 3874386 Query 133517 CTTGCCCGCGTAAATG--AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||| || ||||| |||| ||||||||| || |||||||||||||||| |||| Sbjct 3874385 CTTGCCAGC--AAATGTCAGCCTCTGCTGGTCAGGTAGGATGCCTTCCTTGTCTTGGATC 3874328 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| || ||| || || | |||| ||| ||||| Sbjct 3874327 TTAGCCTTGACATTCTTGATGGTGTCACTGAGCTAGACCTCAAGAGTGATGGTCTTGCCC 3874268 Query 133635 GTCAGAGTTTTTACGAAAATCT 133656 |||| || || ||||| |||| Sbjct 3874267 CTCAGGGTCTTCACGAAGATCT 3874246 >seq366 Length=4409749 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| |||||||||| || ||||| || || ||| | | | ||||| |||||||| | Sbjct 1116236 GGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCA-TCCTCCAGCTGCTTTC 1116294 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||||||||| || |||||| || Sbjct 1116295 CGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATCTTGGCCT 1116354 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 ||| | ||||| ||||| ||||||| || || | |||| ||| || Sbjct 1116355 TGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 1116403 >seq37 Length=11501336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||||| | ||||| || |||||||| || ||||||| || | Sbjct 11476730 TCTTCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCTGGTCAGGGAGGATGCCCTCTTCA 11476789 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | || || | |||||||| || | ||||| | Sbjct 11476790 TCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTAGGCTCCACCTCTAGGGTGATG 11476849 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| |||||| || || ||||| || ||||| Sbjct 11476850 GTCTTGCTGGTCAGGGTCTTCACGAAGATTTGCAT 11476884 >seq28 Length=9942386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || || || || || ||| | || || |||||||||| Sbjct 239184 GGTGGACTCTTTCTGGATGTTATAGTCAGACAGGGTGCAGCCATC-TCCAGCTGCTTGCT 239242 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||| || || |||||||||||||||| | |||| ||| Sbjct 239243 GGCAAATATCAGCCTGTGCTGATCAGGTAGGATGCCTTCCTTGTCTTGGGTCTTGGCCTT 239302 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| || ||||||| | || |||| ||| ||| | |||| || Sbjct 239303 GACATTCTTGATGGTGTCACTGAGCTCCACCTGGA--GTGATGGTCTTGTCCGTCAAGGT 239360 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 239361 CTTCACCAAGATCTGCATG 239379 >seq542 Length=2601263 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/203 (70%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| |||||||||| || ||| || || ||| | | | ||||| |||| |||| Sbjct 577049 GGTGTACTCTTTCTGGATGGTGTGGTCAGGCAAGGTGTGGCCA-TCCTCCAGCTACTTGT 577107 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | | | | || |||| |||||||| ||||||||||||||||| ||| || || Sbjct 577108 CAGTG-ACATCAGCCACTGCTGGT-----GGGATGCCTTCCTTGTCTTCGATATTGGCCT 577161 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| | | || ||||| || ||||| |||| | Sbjct 577162 TGACATTCTCCATGGTGTCATTGGGCTCAATCTTGAGGGTGATAGTCTTGCCCATCAGGG 577221 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 |||| ||||| || || ||| || Sbjct 577222 TTTTCACGAAGATATGTATGTCT 577244 >seq4 Length=18898765 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/182 (72%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 11612672 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCTA-TCTTCCAGCTGCTTGC 11612730 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 || ||||||| | || |||||| || |||||||| || || || |||||| || Sbjct 11612731 TGGC--AAATGAGTCACTACTGGTCAGG-GGGATGCCCTCTTTATCTTGGATCTTGGCCT 11612787 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | ||||||| || | ||||| ||| ||||| ||||| | Sbjct 11612788 TCACATTCTCGATGGTGTCACTAGGCTCCATCTCTAGGGTGATGGTCTTGCCAGTCAGGG 11612847 Query 133642 TT 133643 || Sbjct 11612848 TT 11612849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483233951818040