Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq966 259 6e-64 seq116 107 2e-18 seq65 84.2 3e-11 >seq966 Length=1419223 Score = 259 bits (286), Expect = 6e-64 Identities = 662/1000 (66%), Gaps = 21/1000 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 ||| || ||||| | |||| ||| || | |||||||| || || ||| ||| Sbjct 877546 CCAAGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATCCA 877487 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAAT-ATCCAATTAAGATCCCCC 162177 || |||||||| ||||| ||||| || || | || ||||| | || || || Sbjct 877486 TGTCAAACTTGTTGGCGAAAAGGTGGTG----TTGGTGAAGCATCCAGCTCAGGTCGCCA 877431 Query 162178 GATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCA 162237 |||||| || |||||||| |||||||| || ||||||||||| || || | || || Sbjct 877430 ACTCCGAAAACACACACGGAGCGCACGTGGACTCCGCTGCACGGTGGGTAAGGAGCGCCT 877371 Query 162238 TCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCG 162297 | | || || || || |||| |||||||| || ||||||| || || | |||||| Sbjct 877370 TTGGAAACGTCACCTTCAAAGTACTGCCACTTGACAAACCTAGCGACGGCATTCATGTCA 877311 Query 162298 GAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 || ||| ||||| | || || | | ||||| || | || | ||||| | | Sbjct 877310 GACAAGTCATACTTATGGCTCGAGGGGAGAGAACCAGGGACTTCAGGGATCCTCTGGATA 877251 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 | ||||| |||| || ||||| || || || |||| | |||||||||||||| || | Sbjct 877250 CTGGCCCAGAGGTACTCATCTGGGCTGTATGTATCCTGTGCCCACTCCATGAACTTCCGG 877191 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | ||| | || || || ||| | || | ||||| || || Sbjct 877190 ATATTTTCATTTTCTAGCACATAGCCTACATACTCCCTACTGACTACGAAGTAGGCACTG 877131 Query 162478 CCAGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTT-GAC 162533 || ||||| | || | || || ||||| ||| ||||| || || ||||| ||| Sbjct 877130 CCTGAAAAGAGAGGAGTTTTGAGT---GGAGGTGGCGCTTTGGCTACCCCAGTGTTTGAC 877074 Query 162534 TACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA--GAC 162591 | | | || || || || ||| ||| || ||||||| |||| || || || Sbjct 877073 -AGCTTCCCGTCAACAACGGCGTATCTTTTTTTCCACCTT----TCTTCCTTGTTCTGAG 877019 Query 162592 GGGTGTTCG--GTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCT 162649 | | ||| || || || |||| ||| || | ||| |||| | || || | Sbjct 877018 GCATCTTCTCAGTTTCCAGGTTGTTTTCACCTGAGAATGACTTGAGCTTCCTGACAATTT 876959 Query 162650 CTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAA 162709 |||| ||||| |||| || || || | || || ||||| || | || ||||| || Sbjct 876958 CTAGGTTGGTTTTAATAGGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTG 876899 Query 162710 CGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACG 162769 | || | || |||||| |||| | |||||| || || ||||| || |||||||| || | Sbjct 876898 CACTCATTCTGTACAGGTCCTTCATACAGTTGAGGTCAGCCTGCACCCGACTCCAGGATG 876839 Query 162770 CGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCC 162829 | || || || |||||||| |||| ||||||||||| | || || || | || | Sbjct 876838 CATAAACAACATTCTCCAACTGGCTGGCCACAAAGACATTACCAAAGCAGGATGCAATGC 876779 Query 162830 CCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 ||| ||| || | | || || ||||| | || || || | |||||| | || Sbjct 876778 CCACCACTGCGGCTAAAAAGGATTCCTCTGCTTTTTTGTCCACATGAATGCAGTAGAAAT 876719 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 ||||||| |||||||||||||| | || || | ||| || ||||| || || |||| Sbjct 876718 TCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATCTTGTGATGAACCA 876659 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACT 163009 | || ||||| || || || || | |||| || ||| || | | || || ||| | Sbjct 876658 CTATGGAATATGCAATTGGAAAGCCGACCTCTTCTTTACTAAGGGGCTCTACAATGTATT 876599 Query 163010 TGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 |||| ||| | || | |||||||| |||||||| Sbjct 876598 TGCGCATCCTGATGAAAGAGGCACAGTCACGGGTCATGTT 876559 >seq116 Length=6578183 Score = 107 bits (118), Expect = 2e-18 Identities = 408/628 (65%), Gaps = 13/628 (2%) Strand=Plus/Minus Query 176967 TAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGAT 177026 || || | ||| |||||||| | || | || | ||||| || || || || || || Sbjct 1486764 TAATCTTCCACATGAATGAATGAATCAGCTGGAATATAATTCTCATAGTTTTCCCTAGAC 1486705 Query 177027 GTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATA 177086 | ||| || || | ||||| | || || | || | ||||| ||||| || || Sbjct 1486704 GGTCCCAGGACAACAGGTACTGAGCCAGCTAAAAATGCATTATAGAGCTTTTCTGTGATG 1486645 Query 177087 TAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCGGG 177146 || || |||| | ||||| ||||| | ||||| ||||| || | ||||| | | ||| Sbjct 1486644 TAATCTTTGTGAATTGAGTTTTCAAAAGAAAGATAAAATTTGCAAGTAGATA-TGGTGGG 1486586 Query 177147 A-TGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTAT 177205 | | | || | |||| | || ||||| | | | | ||| || || || || || Sbjct 1486585 AATCAGGTTTTTATCGTTCACGTATTCTCCAAATGCTTGCCCATAGGTGTGGATTTCAAT 1486526 Query 177206 GTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACGTGGTCGTTGTTCCAATTGCTGA 177264 || |||||||| || || || || | | | || || |||||| || || | Sbjct 1486525 ACTCTTGCTGAGCTCGTTATAATA-CTTGACCCTGGCATGCTCAGGGTTCCAGTTACTCA 1486467 Query 177265 CGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGGATTCGATACTAATGCAGTGTCT 177323 | |||||||| || ||||| ||| |||| || || ||||| || | | | | Sbjct 1486466 CAACCCAGCACACCAACTT-CTCCTTGCTTGGCAC----TTCGAACACAAAGGGGCTTGT 1486412 Query 177324 -CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGT 177382 || | ||| | | || || ||||| |||||||| || || || | || |||| || Sbjct 1486411 GCTCACCGTCAAGAAGCCGTAAGGCACTTGAATATCTGAATCACGGCGATAAGTTAGTGT 1486352 Query 177383 GAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGT 177441 || ||||| | || ||| || || | ||| ||| | | | | |||| || ||||||| Sbjct 1486351 CAGGTTGAACAAGTGTTCGATGCCACTCTTTTGAGGAG-TATGAGTGGGAGACTCTAAGT 1486293 Query 177442 TCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTA 177501 ||||||| ||||| || ||||||| ||| || | | | ||||| | || |||| Sbjct 1486292 TCATCCAAATCCATTTCTGAAAGGGTGGCCTAGCCTGCTGAGGTAAATTAGTCAGATCCC 1486233 Query 177502 TACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTA 177561 || || ||||||||||| | | || || | || ||||| || | || | |||| Sbjct 1486232 AGCTGATGTCTCTGTGGTGTATCAGGACCGCGTGGGATTTGTTGTACAGTGAGCGGTCTG 1486173 Query 177562 CGGTAACGTGACACGCACGTATGTTAAA 177589 |||| || ||| | | ||||| || Sbjct 1486172 TTGTAAGATGGCACCCTTGGATGTTGAA 1486145 >seq65 Length=10862630 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/202 (69%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 |||||||||| || ||| || | || ||||| |||| | || || ||| | || || Sbjct 8831902 ACAGTCCCCAGGTATAAAACCTGACAGATCACTTCCT---TCCCAACCTGATTCTTGGGG 8831958 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGGTTTTA 171643 ||||| || | || ||||| || |||||||| ||||| || ||| | | | Sbjct 8831959 TCTTTGACCCGGAGGATGCTGGTGACAGATGTGGTCCCATTTGAATGGACGTGACTCTCG 8832018 Query 171644 GTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGCA 171703 |||||||| || ||||| | || | | ||||| || |||| ||||| | ||| Sbjct 8832019 GTACTATTCTCAATTCCTGTACCAGTGCCCTTCCAGGCGATGGCAGGGGCTGGGCGGGCA 8832078 Query 171704 GTAGCAGAGCAAGTTATGTTTA 171725 || ||||||||||| ||||||| Sbjct 8832079 GTCGCAGAGCAAGTGATGTTTA 8832100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578208428801600