Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq966 259 6e-64
seq116 107 2e-18
seq65 84.2 3e-11
>seq966
Length=1419223
Score = 259 bits (286), Expect = 6e-64
Identities = 662/1000 (66%), Gaps = 21/1000 (2%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
||| || ||||| | |||| ||| || | |||||||| || || ||| |||
Sbjct 877546 CCAAGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATCCA 877487
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAAT-ATCCAATTAAGATCCCCC 162177
|| |||||||| ||||| ||||| || || | || ||||| | || || ||
Sbjct 877486 TGTCAAACTTGTTGGCGAAAAGGTGGTG----TTGGTGAAGCATCCAGCTCAGGTCGCCA 877431
Query 162178 GATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCA 162237
|||||| || |||||||| |||||||| || ||||||||||| || || | || ||
Sbjct 877430 ACTCCGAAAACACACACGGAGCGCACGTGGACTCCGCTGCACGGTGGGTAAGGAGCGCCT 877371
Query 162238 TCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCG 162297
| | || || || || |||| |||||||| || ||||||| || || | ||||||
Sbjct 877370 TTGGAAACGTCACCTTCAAAGTACTGCCACTTGACAAACCTAGCGACGGCATTCATGTCA 877311
Query 162298 GAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357
|| ||| ||||| | || || | | ||||| || | || | ||||| | |
Sbjct 877310 GACAAGTCATACTTATGGCTCGAGGGGAGAGAACCAGGGACTTCAGGGATCCTCTGGATA 877251
Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417
| ||||| |||| || ||||| || || || |||| | |||||||||||||| || |
Sbjct 877250 CTGGCCCAGAGGTACTCATCTGGGCTGTATGTATCCTGTGCCCACTCCATGAACTTCCGG 877191
Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
| ||| || | ||| | || || || ||| | || | ||||| || ||
Sbjct 877190 ATATTTTCATTTTCTAGCACATAGCCTACATACTCCCTACTGACTACGAAGTAGGCACTG 877131
Query 162478 CCAGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTT-GAC 162533
|| ||||| | || | || || ||||| ||| ||||| || || ||||| |||
Sbjct 877130 CCTGAAAAGAGAGGAGTTTTGAGT---GGAGGTGGCGCTTTGGCTACCCCAGTGTTTGAC 877074
Query 162534 TACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA--GAC 162591
| | | || || || || ||| ||| || ||||||| |||| || || ||
Sbjct 877073 -AGCTTCCCGTCAACAACGGCGTATCTTTTTTTCCACCTT----TCTTCCTTGTTCTGAG 877019
Query 162592 GGGTGTTCG--GTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCT 162649
| | ||| || || || |||| ||| || | ||| |||| | || || |
Sbjct 877018 GCATCTTCTCAGTTTCCAGGTTGTTTTCACCTGAGAATGACTTGAGCTTCCTGACAATTT 876959
Query 162650 CTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAA 162709
|||| ||||| |||| || || || | || || ||||| || | || ||||| ||
Sbjct 876958 CTAGGTTGGTTTTAATAGGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTG 876899
Query 162710 CGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACG 162769
| || | || |||||| |||| | |||||| || || ||||| || |||||||| || |
Sbjct 876898 CACTCATTCTGTACAGGTCCTTCATACAGTTGAGGTCAGCCTGCACCCGACTCCAGGATG 876839
Query 162770 CGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCC 162829
| || || || |||||||| |||| ||||||||||| | || || || | || |
Sbjct 876838 CATAAACAACATTCTCCAACTGGCTGGCCACAAAGACATTACCAAAGCAGGATGCAATGC 876779
Query 162830 CCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889
||| ||| || | | || || ||||| | || || || | |||||| | ||
Sbjct 876778 CCACCACTGCGGCTAAAAAGGATTCCTCTGCTTTTTTGTCCACATGAATGCAGTAGAAAT 876719
Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949
||||||| |||||||||||||| | || || | ||| || ||||| || || ||||
Sbjct 876718 TCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATCTTGTGATGAACCA 876659
Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACT 163009
| || ||||| || || || || | |||| || ||| || | | || || ||| |
Sbjct 876658 CTATGGAATATGCAATTGGAAAGCCGACCTCTTCTTTACTAAGGGGCTCTACAATGTATT 876599
Query 163010 TGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049
|||| ||| | || | |||||||| ||||||||
Sbjct 876598 TGCGCATCCTGATGAAAGAGGCACAGTCACGGGTCATGTT 876559
>seq116
Length=6578183
Score = 107 bits (118), Expect = 2e-18
Identities = 408/628 (65%), Gaps = 13/628 (2%)
Strand=Plus/Minus
Query 176967 TAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGAT 177026
|| || | ||| |||||||| | || | || | ||||| || || || || || ||
Sbjct 1486764 TAATCTTCCACATGAATGAATGAATCAGCTGGAATATAATTCTCATAGTTTTCCCTAGAC 1486705
Query 177027 GTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATA 177086
| ||| || || | ||||| | || || | || | ||||| ||||| || ||
Sbjct 1486704 GGTCCCAGGACAACAGGTACTGAGCCAGCTAAAAATGCATTATAGAGCTTTTCTGTGATG 1486645
Query 177087 TAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCGGG 177146
|| || |||| | ||||| ||||| | ||||| ||||| || | ||||| | | |||
Sbjct 1486644 TAATCTTTGTGAATTGAGTTTTCAAAAGAAAGATAAAATTTGCAAGTAGATA-TGGTGGG 1486586
Query 177147 A-TGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTAT 177205
| | | || | |||| | || ||||| | | | | ||| || || || || ||
Sbjct 1486585 AATCAGGTTTTTATCGTTCACGTATTCTCCAAATGCTTGCCCATAGGTGTGGATTTCAAT 1486526
Query 177206 GTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACGTGGTCGTTGTTCCAATTGCTGA 177264
|| |||||||| || || || || | | | || || |||||| || || |
Sbjct 1486525 ACTCTTGCTGAGCTCGTTATAATA-CTTGACCCTGGCATGCTCAGGGTTCCAGTTACTCA 1486467
Query 177265 CGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGGATTCGATACTAATGCAGTGTCT 177323
| |||||||| || ||||| ||| |||| || || ||||| || | | | |
Sbjct 1486466 CAACCCAGCACACCAACTT-CTCCTTGCTTGGCAC----TTCGAACACAAAGGGGCTTGT 1486412
Query 177324 -CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGT 177382
|| | ||| | | || || ||||| |||||||| || || || | || |||| ||
Sbjct 1486411 GCTCACCGTCAAGAAGCCGTAAGGCACTTGAATATCTGAATCACGGCGATAAGTTAGTGT 1486352
Query 177383 GAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGT 177441
|| ||||| | || ||| || || | ||| ||| | | | | |||| || |||||||
Sbjct 1486351 CAGGTTGAACAAGTGTTCGATGCCACTCTTTTGAGGAG-TATGAGTGGGAGACTCTAAGT 1486293
Query 177442 TCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTA 177501
||||||| ||||| || ||||||| ||| || | | | ||||| | || ||||
Sbjct 1486292 TCATCCAAATCCATTTCTGAAAGGGTGGCCTAGCCTGCTGAGGTAAATTAGTCAGATCCC 1486233
Query 177502 TACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTA 177561
|| || ||||||||||| | | || || | || ||||| || | || | ||||
Sbjct 1486232 AGCTGATGTCTCTGTGGTGTATCAGGACCGCGTGGGATTTGTTGTACAGTGAGCGGTCTG 1486173
Query 177562 CGGTAACGTGACACGCACGTATGTTAAA 177589
|||| || ||| | | ||||| ||
Sbjct 1486172 TTGTAAGATGGCACCCTTGGATGTTGAA 1486145
>seq65
Length=10862630
Score = 84.2 bits (92), Expect = 3e-11
Identities = 140/202 (69%), Gaps = 3/202 (1%)
Strand=Plus/Plus
Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583
|||||||||| || ||| || | || ||||| |||| | || || ||| | || ||
Sbjct 8831902 ACAGTCCCCAGGTATAAAACCTGACAGATCACTTCCT---TCCCAACCTGATTCTTGGGG 8831958
Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGGTTTTA 171643
||||| || | || ||||| || |||||||| ||||| || ||| | | |
Sbjct 8831959 TCTTTGACCCGGAGGATGCTGGTGACAGATGTGGTCCCATTTGAATGGACGTGACTCTCG 8832018
Query 171644 GTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGCA 171703
|||||||| || ||||| | || | | ||||| || |||| ||||| | |||
Sbjct 8832019 GTACTATTCTCAATTCCTGTACCAGTGCCCTTCCAGGCGATGGCAGGGGCTGGGCGGGCA 8832078
Query 171704 GTAGCAGAGCAAGTTATGTTTA 171725
|| ||||||||||| |||||||
Sbjct 8832079 GTCGCAGAGCAAGTGATGTTTA 8832100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578208428801600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |