Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq309 114 3e-20
seq423 102 2e-16
seq154 100 7e-16
seq38 98.7 2e-15
seq6 86.0 1e-11
>seq309
Length=1536079
Score = 114 bits (126), Expect = 3e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || ||||| ||||| | || || ||| || ||||| | |||
Sbjct 714622 AAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACGATAGAAAAT 714681
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||| ||| || || || || || ||||||
Sbjct 714682 GTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGAGGCTGATCTTC 714741
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| |||||||||| | |||||| | || ||||| | || || |||||
Sbjct 714742 GCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATTCAAAAGGAGTCC 714801
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|| ||||| ||||| |||||||||||
Sbjct 714802 ACCCTTCATCTTGTGTTGAGACTTCG 714827
Score = 100 bits (110), Expect = 7e-16
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || ||||| ||||| | || || ||| || ||||| | |||
Sbjct 713260 AAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACGATAGAAAAT 713319
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
||||| ||||| || || || ||||| ||| || || ||||| || |||||
Sbjct 713320 ATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAGCAAAGGCTGATCTTT 713379
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| |||||||||| | |||||| | ||||| | || || |||||
Sbjct 713380 GCTGGTAAGCAGCTGGAAGATGGTCGTACTTTG----AATACAATATTCAAAAGGAGTCC 713435
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|| ||||| ||||| |||||||||||
Sbjct 713436 ACCCTTCATCTTGTGTTGAGACTTCG 713461
Score = 100 bits (110), Expect = 7e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| ||||| || ||||| || || | ||| || |||| ||||||
Sbjct 714827 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTA 714768
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||||||||||||||||| || |||||||| |||| || |||
Sbjct 714767 CGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGA 714723
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 4/105 (4%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| ||||| || ||||| || || | ||| || ||| ||||
Sbjct 713461 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCA----AAGTA 713406
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||||||||||||||||| || || ||||| |||| ||| |||
Sbjct 713405 CGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGA 713361
>seq423
Length=2413410
Score = 102 bits (112), Expect = 2e-16
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || ||||| ||||| ||||| | || | ||| || ||||| | |||
Sbjct 7302 AAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTCAGACACCATAGAAAAT 7361
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || | || ||||||||| || || || || | ||||||
Sbjct 7362 GTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCAGCAGAGGCGGATCTTC 7421
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
| || |||||| |||||||||| | |||||| | || ||||| | || || |||||
Sbjct 7422 ACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATTCAAAAGGAGTCC 7481
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|| ||||| ||||| |||||||||||
Sbjct 7482 ACCCTTCATCTTGTGTTGAGACTTCG 7507
Score = 91.5 bits (100), Expect = 3e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| ||||| || ||||| || || | ||| || |||| ||||||
Sbjct 7507 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTA 7448
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||||||||||||||||| || | |||||| ||| || |||
Sbjct 7447 CGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGA 7403
>seq154
Length=6791889
Score = 100 bits (110), Expect = 7e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|||||||| || || ||||| || ||||| |||| | || || ||| || |||
Sbjct 1707642 CAGATATTCGTGAAGACCCTCACGGGGAAAACCATCATGCTCGAGGTTGAACCCTCGGAC 1707701
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| |||||| ||||| || || || |||||||| || || ||
Sbjct 1707702 ACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATCAGCAG 1707761
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| || | |||||| || |||||| |||||||||| | |||||| | || |||| |
Sbjct 1707762 AGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGTATT 1707821
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| | ||||| || ||||| ||||| |||||||||||
Sbjct 1707822 CAATAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCG 1707859
Score = 91.5 bits (100), Expect = 3e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| ||||| || ||||| | || | | | ||||||| ||||||
Sbjct 1707859 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTA 1707800
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||||||||||||||||| || |||||| | |||| || |||
Sbjct 1707799 CGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGA 1707755
>seq38
Length=12148825
Score = 98.7 bits (108), Expect = 2e-15
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 206174 AGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACA 206233
|||| ||| || || || | || ||||| ||||| | || || ||| ||| ||||
Sbjct 10461220 AGATTTTTGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCTTCGGACA 10461161
Query 206234 CAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAA 206293
| | ||| |||||| |||| || || || ||||||||| || || || |
Sbjct 10461160 CTATAGAAAATGTAAAGGCCCAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGA 10461101
Query 206294 GACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCC 206353
| || | |||||| || |||||| ||||||||||| | |||||| | || |||| | |
Sbjct 10461100 GGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAGTATTC 10461041
Query 206354 AGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
| | ||||| || ||||| ||||| | |||||||||
Sbjct 10461040 AATAGGAGTCCACCCTTCATCTTGTGTCGAGACTTCG 10461004
Score = 91.5 bits (100), Expect = 3e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||| | ||||| ||||| || ||||| | || | | | ||||||| ||||||
Sbjct 10461004 CGAAGTCTCGACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTA 10461063
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| |||||||||||||||||| || |||||| | |||| || |||
Sbjct 10461064 CGTCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGA 10461108
>seq6
Length=12818899
Score = 86.0 bits (94), Expect = 1e-11
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 206229 TGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288
|||||| |||| || ||| |||||| || || ||||| || || || |||
Sbjct 2580335 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGACCA 2580394
Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|| || || ||||| || || |||||| |||||||||| | || || | || |||||
Sbjct 2580395 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 2580454
Query 206349 CGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378
| ||||||||||||| ||||| ||||| ||
Sbjct 2580455 CATCCAGAAAGAGTCCACTCTGCACCTGGT 2580484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181352591775241
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |