Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq309 114 3e-20 seq423 102 2e-16 seq154 100 7e-16 seq38 98.7 2e-15 seq6 86.0 1e-11 >seq309 Length=1536079 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| ||||| | || || ||| || ||||| | ||| Sbjct 714622 AAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACGATAGAAAAT 714681 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||| ||| || || || || || |||||| Sbjct 714682 GTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGAGGCTGATCTTC 714741 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | |||||| | || ||||| | || || ||||| Sbjct 714742 GCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATTCAAAAGGAGTCC 714801 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| ||||||||||| Sbjct 714802 ACCCTTCATCTTGTGTTGAGACTTCG 714827 Score = 100 bits (110), Expect = 7e-16 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| ||||| | || || ||| || ||||| | ||| Sbjct 713260 AAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACGATAGAAAAT 713319 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||| || || || ||||| ||| || || ||||| || ||||| Sbjct 713320 ATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAGCAAAGGCTGATCTTT 713379 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | |||||| | ||||| | || || ||||| Sbjct 713380 GCTGGTAAGCAGCTGGAAGATGGTCGTACTTTG----AATACAATATTCAAAAGGAGTCC 713435 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| ||||||||||| Sbjct 713436 ACCCTTCATCTTGTGTTGAGACTTCG 713461 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| ||||| || ||||| || || | ||| || |||| |||||| Sbjct 714827 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTA 714768 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || |||||||| |||| || ||| Sbjct 714767 CGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGA 714723 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| ||||| || ||||| || || | ||| || ||| |||| Sbjct 713461 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCA----AAGTA 713406 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| |||| ||| ||| Sbjct 713405 CGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGA 713361 >seq423 Length=2413410 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| ||||| ||||| | || | ||| || ||||| | ||| Sbjct 7302 AAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTCAGACACCATAGAAAAT 7361 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || | || ||||||||| || || || || | |||||| Sbjct 7362 GTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCAGCAGAGGCGGATCTTC 7421 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 | || |||||| |||||||||| | |||||| | || ||||| | || || ||||| Sbjct 7422 ACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATTCAAAAGGAGTCC 7481 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| ||||||||||| Sbjct 7482 ACCCTTCATCTTGTGTTGAGACTTCG 7507 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| ||||| || ||||| || || | ||| || |||| |||||| Sbjct 7507 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTA 7448 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || | |||||| ||| || ||| Sbjct 7447 CGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGA 7403 >seq154 Length=6791889 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| || ||||| |||| | || || ||| || ||| Sbjct 1707642 CAGATATTCGTGAAGACCCTCACGGGGAAAACCATCATGCTCGAGGTTGAACCCTCGGAC 1707701 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||| || || || |||||||| || || || Sbjct 1707702 ACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATCAGCAG 1707761 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || | |||||| || |||||| |||||||||| | |||||| | || |||| | Sbjct 1707762 AGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGTATT 1707821 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || | ||||| || ||||| ||||| ||||||||||| Sbjct 1707822 CAATAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCG 1707859 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| ||||| || ||||| | || | | | ||||||| |||||| Sbjct 1707859 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTA 1707800 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || |||||| | |||| || ||| Sbjct 1707799 CGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGA 1707755 >seq38 Length=12148825 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 206174 AGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACA 206233 |||| ||| || || || | || ||||| ||||| | || || ||| ||| |||| Sbjct 10461220 AGATTTTTGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCTTCGGACA 10461161 Query 206234 CAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAA 206293 | | ||| |||||| |||| || || || ||||||||| || || || | Sbjct 10461160 CTATAGAAAATGTAAAGGCCCAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGA 10461101 Query 206294 GACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCC 206353 | || | |||||| || |||||| ||||||||||| | |||||| | || |||| | | Sbjct 10461100 GGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAGTATTC 10461041 Query 206354 AGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | | ||||| || ||||| ||||| | ||||||||| Sbjct 10461040 AATAGGAGTCCACCCTTCATCTTGTGTCGAGACTTCG 10461004 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||| | ||||| ||||| || ||||| | || | | | ||||||| |||||| Sbjct 10461004 CGAAGTCTCGACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTA 10461063 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||||||||| || |||||| | |||| || ||| Sbjct 10461064 CGTCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGA 10461108 >seq6 Length=12818899 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 206229 TGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 |||||| |||| || ||| |||||| || || ||||| || || || ||| Sbjct 2580335 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGACCA 2580394 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 || || || ||||| || || |||||| |||||||||| | || || | || ||||| Sbjct 2580395 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 2580454 Query 206349 CGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 | ||||||||||||| ||||| ||||| || Sbjct 2580455 CATCCAGAAAGAGTCCACTCTGCACCTGGT 2580484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181352591775241