Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq657 100 3e-16
seq309 87.8 2e-12
>seq657
Length=1571634
Score = 100 bits (110), Expect = 3e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| || ||||| | |||||||||||||||||| ||| ||||| |||||||| |||
Sbjct 950059 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTTTGCTGGTTG 950000
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 147624
|| |||||||| || | |||||| |||||||||| || ||| ||||| || | |
Sbjct 949999 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTCTGTCTGAGAT 949940
Query 147625 TCAACGAT 147632
|||| |||
Sbjct 949939 TCAATGAT 949932
>seq309
Length=1536079
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970
||| || | ||| | | | ||||| |||||||| ||||| || || ||||| |||
Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760
Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
||| ||||| ||||| | |||| || | ||| ||||| ||||| || ||||| |||||
Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700
Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090
|| || || | | ||| | || || | || || || |||| ||| | ||
Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640
Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||| || || || || || | ||||||||||||
Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970
||| || | ||| | | | ||||| |||||||| ||||| || | ||||| |||
Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC----AAAGTACGACCATC 713398
Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
||| ||||| ||||| | | |||| || | || ||||| ||||| || ||||| |||||
Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338
Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090
|| || || | | ||| | || || | || || || |||| ||| | ||
Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278
Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||| || || || || || | ||||||||||||
Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476426983813560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |