Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq657 100 3e-16 seq309 87.8 2e-12 >seq657 Length=1571634 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||||||||||||||| ||| ||||| |||||||| ||| Sbjct 950059 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTTTGCTGGTTG 950000 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 147624 || |||||||| || | |||||| |||||||||| || ||| ||||| || | | Sbjct 949999 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTCTGTCTGAGAT 949940 Query 147625 TCAACGAT 147632 |||| ||| Sbjct 949939 TCAATGAT 949932 >seq309 Length=1536079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| || | ||| | | | ||||| |||||||| ||||| || || ||||| ||| Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| ||||| | |||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | || || | || || || |||| ||| | || Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || || | |||||||||||| Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| || | ||| | | | ||||| |||||||| ||||| || | ||||| ||| Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC----AAAGTACGACCATC 713398 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| ||||| | | |||| || | || ||||| ||||| || ||||| ||||| Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | || || | || || || |||| ||| | || Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || || | |||||||||||| Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476426983813560