Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq1137 107 6e-20
seq387 100 9e-18
seq294 100 9e-18
seq109 98.7 3e-17
seq100 98.7 3e-17
seq6 98.7 3e-17
>seq1137
Length=793581
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 167572 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 167631
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 167632 TCCCGGGTTTCGGC 167645
Score = 107 bits (118), Expect = 6e-20
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 174315 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 174374
Query 2829 CCGGGCTTCAGC 2840
||||| ||||||
Sbjct 174375 CCGGGTTTCAGC 174386
>seq387
Length=3314187
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1015209 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 1015150
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 1015149 CCCGGGTTTCGGC 1015137
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 259862 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 259921
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 259922 CCGGGTTTCGGC 259933
>seq294
Length=4569307
Score = 100 bits (110), Expect = 9e-18
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 3767337 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTAAAGATCTAAAGGTCCCTGGTTCAAAC 3767278
Query 2829 CCGGGCTT 2836
| ||| ||
Sbjct 3767277 CTGGGTTT 3767270
>seq109
Length=6874426
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 38346 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 38287
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 38286 CCGGGTTTCGGC 38275
>seq100
Length=2770457
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1858121 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1858180
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1858181 CCGGGTTTCGGC 1858192
>seq6
Length=12818899
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2563370 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2563429
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2563430 CCGGGTTTCGGC 2563441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15844239690045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |