Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq65 187 3e-42 seq457 145 9e-30 seq481 105 8e-18 seq25 104 3e-17 >seq65 Length=10862630 Score = 187 bits (206), Expect = 3e-42 Identities = 235/320 (73%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || ||||||| |||| || || || | ||| || ||| Sbjct 8834458 GTGGTGACCCAGGATGAAAGAAAGCTGCTGCACACACCTGCATCTTTACGATGTTCTCTG 8834399 Query 171132 CAGACT-TCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGA 171190 | ||| || ||||| ||||||| || |||||||||| || || | ||||| Sbjct 8834398 AA-ACTGTCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCCGTAAGCCCAGA 8834340 Query 171191 GAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAA 171250 |||||| | |||| ||||||| ||| ||||| || ||||| || || || || |||| Sbjct 8834339 AAACATGGTCACTTACAGCAAAGCCCATGGGGTTGTAGTCCAACCTGCATACAAAGACAG 8834280 Query 171251 GATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTT 171310 | |||||||||| |||| |||||| ||| ||| |||||| || ||||| || || | Sbjct 8834279 GGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACACAACACT 8834220 Query 171311 AGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGG 171370 || || ||||| ||||||| || ||||| || || ||| ||||||| ||||| || Sbjct 8834219 GGATGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTCTTGCTGGGAAGATCTCAGG 8834160 Query 171371 GGTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 8834159 AACAGCCTGCCTCACCCTCT 8834140 Score = 136 bits (150), Expect = 5e-27 Identities = 182/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| |||||||| || Sbjct 8832146 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 8832087 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || |||||| | || ||| |||||| Sbjct 8832086 TCTGCGACTGCCCGCCCAGCCCCTGCCATCGCCTGGAAGGGCACTGGTACAGGAATTGAG 8832027 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || |||||| ||||| || || ||||| ||||| | |||| Sbjct 8832026 AATAGTACCGAGAGTCACGTCCATTCAAATGGGACCACATCTGTCACCAGCATCCTCCGG 8831967 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| | || ||||| || ||||| || || | ||||||| Sbjct 8831966 GTCAAAGACCCCAAGAATCAGGTTGGGAAGGAAGTGATCTGTCAGGTTTTATACCTGGGG 8831907 Query 171633 AATGTAACTAACT 171645 | ||| | | ||| Sbjct 8831906 ACTGTGATTGACT 8831894 >seq457 Length=2943904 Score = 145 bits (160), Expect = 9e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | |||||||| ||||| || Sbjct 1188164 CTTCAGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAA 1188223 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || |||| |||||| |||||||| || |||||||| | Sbjct 1188224 GGGCACGCCCAGGCCCATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATT 1188283 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || ||||| || ||| ||||| || ||||| ||||| Sbjct 1188284 CACCACATAGAACTGACAGAGGGCATGGCAGGGAGGCAGTGCCAT 1188328 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| || ||||||||||| ||||| || || |||||||| || || | |||| Sbjct 1194039 GCTCCAAAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTCCCCTTCCTGCC-GTGC 1194097 Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | ||||| || ||||||| | ||| |||||||| | |||||| Sbjct 1194098 AGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCC 1194157 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGA 147439 ||||| ||| || || |||| | ||||| ||| ||| Sbjct 1194158 CTTGGAGGACAGTTCTTTAGCATTTGTGGACCCCTGGA 1194195 >seq481 Length=1457593 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | || ||||||| |||||| | || || ||||| Sbjct 242244 GTACTCCCTGGTGTTCATCATTGGAGTGATAGGCAATGTTCTGGTGGTTCTGGTGCTCAT 242303 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||| |||||| | | |||||||| ||||| |||||||||||||||| | ||| Sbjct 242304 GCAGTACAGGAGGCTTCGAAGCATGACCAGCATCTACCTGTTCAACCTGGCCATCTCTGA 242363 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||||||| | || || |||||| ||| Sbjct 242364 TCTGGTCTTTCTTTTCACTTTGCCTTTCTGGATTGACT 242401 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| || | |||| | || ||||| ||||||| | || || ||||| Sbjct 219642 GTACTCCCTGGTATTCATCATTGGTGTGATAGGCAACATCCTGGTGGTTCTGGTGCTCAT 219701 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || | |||||||| || |||||||| ||||| ||| |||||||||||| | ||| Sbjct 219702 GCAGCATAAGAGGCTTCAGAGCATGACCAGCATCTACCTATTCAACCTGGCCATCTCTGA 219761 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | | ||||| | || || |||||| ||| Sbjct 219762 TCTGGTCTTCCTCTTCACATTACCTTTCTGGATTGACT 219799 >seq25 Length=8104077 Score = 104 bits (114), Expect = 3e-17 Identities = 184/266 (69%), Gaps = 7/266 (3%) Strand=Plus/Minus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 |||||||||||||| |||| | ||||| ||| | || || || |||| || || Sbjct 5743404 AGCTGAATTTTCAGAGGCTGGATATGGTTCGGGTGAATATGTGCATCTCCCAAAGTATGA 5743345 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 ||||| || || ||||| || || | |||||| | || |||| ||| ||| | | | Sbjct 5743344 ACAAAATCACCTGGCTTTAGTCCCATGGTGTGGGCAATCACGTAGATGAACAGGGCATGG 5743285 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 |||| ||||||||||| || |||||||||| ||| || ||||| || || | | || Sbjct 5743284 CTGGTAATGTTGAAGGGCACACCCAGGCCCACGTCTCCTGACCTTTGCTAAAAGGGACAA 5743225 Query 147088 GAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 || ||||| || | | || || || ||| ||| ||||| || ||||| |||| Sbjct 5743224 GACAGCTCTCCATTCACTACATAGAA-TGG-ACA-----TGGCAAGGAGGCAGTGCCAGC 5743172 Query 147148 GCGGGCAGGTCCGCGGGGTTCCAGGC 147173 ||| || || || |||||||| Sbjct 5743171 ATGGGAAGATCTTTTGGCTTCCAGGC 5743146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583262474594400