Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq65 187 3e-42
seq457 145 9e-30
seq481 105 8e-18
seq25 104 3e-17
>seq65
Length=10862630
Score = 187 bits (206), Expect = 3e-42
Identities = 235/320 (73%), Gaps = 2/320 (1%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
||||||||||||||||| || ||||||| |||| || || || | ||| || |||
Sbjct 8834458 GTGGTGACCCAGGATGAAAGAAAGCTGCTGCACACACCTGCATCTTTACGATGTTCTCTG 8834399
Query 171132 CAGACT-TCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGA 171190
| ||| || ||||| ||||||| || |||||||||| || || | |||||
Sbjct 8834398 AA-ACTGTCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCCGTAAGCCCAGA 8834340
Query 171191 GAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAA 171250
|||||| | |||| ||||||| ||| ||||| || ||||| || || || || ||||
Sbjct 8834339 AAACATGGTCACTTACAGCAAAGCCCATGGGGTTGTAGTCCAACCTGCATACAAAGACAG 8834280
Query 171251 GATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTT 171310
| |||||||||| |||| |||||| ||| ||| |||||| || ||||| || || |
Sbjct 8834279 GGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACACAACACT 8834220
Query 171311 AGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGG 171370
|| || ||||| ||||||| || ||||| || || ||| ||||||| ||||| ||
Sbjct 8834219 GGATGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTCTTGCTGGGAAGATCTCAGG 8834160
Query 171371 GGTGGCCTGCCTCACCCTCT 171390
||||||||||||||||
Sbjct 8834159 AACAGCCTGCCTCACCCTCT 8834140
Score = 136 bits (150), Expect = 5e-27
Identities = 182/253 (72%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452
|| ||||||| || || || || || || | |||||| |||||||| |||||||| ||
Sbjct 8832146 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 8832087
Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512
||||| | ||||||||| | ||| || |||||| | || ||| ||||||
Sbjct 8832086 TCTGCGACTGCCCGCCCAGCCCCTGCCATCGCCTGGAAGGGCACTGGTACAGGAATTGAG 8832027
Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572
|| |||| |||| || |||||| ||||| || || ||||| ||||| | ||||
Sbjct 8832026 AATAGTACCGAGAGTCACGTCCATTCAAATGGGACCACATCTGTCACCAGCATCCTCCGG 8831967
Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632
|| ||||||||||||| |||| | || ||||| || ||||| || || | |||||||
Sbjct 8831966 GTCAAAGACCCCAAGAATCAGGTTGGGAAGGAAGTGATCTGTCAGGTTTTATACCTGGGG 8831907
Query 171633 AATGTAACTAACT 171645
| ||| | | |||
Sbjct 8831906 ACTGTGATTGACT 8831894
>seq457
Length=2943904
Score = 145 bits (160), Expect = 9e-30
Identities = 131/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | ||||||||||||||| | |||||||| ||||| ||
Sbjct 1188164 CTTCAGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAA 1188223
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || |||||||||||||| || |||| |||||| |||||||| || |||||||| |
Sbjct 1188224 GGGCACGCCCAGGCCCATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATT 1188283
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
|||| || ||||| || ||| ||||| || ||||| |||||
Sbjct 1188284 CACCACATAGAACTGACAGAGGGCATGGCAGGGAGGCAGTGCCAT 1188328
Score = 93.3 bits (102), Expect = 5e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342
|| ||||| || ||||||||||| ||||| || || |||||||| || || | ||||
Sbjct 1194039 GCTCCAAAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTCCCCTTCCTGCC-GTGC 1194097
Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401
||||| ||| | | ||||| || ||||||| | ||| |||||||| | ||||||
Sbjct 1194098 AGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCC 1194157
Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGA 147439
||||| ||| || || |||| | ||||| ||| |||
Sbjct 1194158 CTTGGAGGACAGTTCTTTAGCATTTGTGGACCCCTGGA 1194195
>seq481
Length=1457593
Score = 105 bits (116), Expect = 8e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||||| | |||| | || ||||||| |||||| | || || |||||
Sbjct 242244 GTACTCCCTGGTGTTCATCATTGGAGTGATAGGCAATGTTCTGGTGGTTCTGGTGCTCAT 242303
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|||||| |||||| | | |||||||| ||||| |||||||||||||||| | |||
Sbjct 242304 GCAGTACAGGAGGCTTCGAAGCATGACCAGCATCTACCTGTTCAACCTGGCCATCTCTGA 242363
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767
||| | | ||||||| | || || |||||| |||
Sbjct 242364 TCTGGTCTTTCTTTTCACTTTGCCTTTCTGGATTGACT 242401
Score = 82.4 bits (90), Expect = 9e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| ||||| || | |||| | || ||||| ||||||| | || || |||||
Sbjct 219642 GTACTCCCTGGTATTCATCATTGGTGTGATAGGCAACATCCTGGTGGTTCTGGTGCTCAT 219701
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|| | |||||||| || |||||||| ||||| ||| |||||||||||| | |||
Sbjct 219702 GCAGCATAAGAGGCTTCAGAGCATGACCAGCATCTACCTATTCAACCTGGCCATCTCTGA 219761
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767
||| | | | ||||| | || || |||||| |||
Sbjct 219762 TCTGGTCTTCCTCTTCACATTACCTTTCTGGATTGACT 219799
>seq25
Length=8104077
Score = 104 bits (114), Expect = 3e-17
Identities = 184/266 (69%), Gaps = 7/266 (3%)
Strand=Plus/Minus
Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967
|||||||||||||| |||| | ||||| ||| | || || || |||| || ||
Sbjct 5743404 AGCTGAATTTTCAGAGGCTGGATATGGTTCGGGTGAATATGTGCATCTCCCAAAGTATGA 5743345
Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027
||||| || || ||||| || || | |||||| | || |||| ||| ||| | | |
Sbjct 5743344 ACAAAATCACCTGGCTTTAGTCCCATGGTGTGGGCAATCACGTAGATGAACAGGGCATGG 5743285
Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087
|||| ||||||||||| || |||||||||| ||| || ||||| || || | | ||
Sbjct 5743284 CTGGTAATGTTGAAGGGCACACCCAGGCCCACGTCTCCTGACCTTTGCTAAAAGGGACAA 5743225
Query 147088 GAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147
|| ||||| || | | || || || ||| ||| ||||| || ||||| ||||
Sbjct 5743224 GACAGCTCTCCATTCACTACATAGAA-TGG-ACA-----TGGCAAGGAGGCAGTGCCAGC 5743172
Query 147148 GCGGGCAGGTCCGCGGGGTTCCAGGC 147173
||| || || || ||||||||
Sbjct 5743171 ATGGGAAGATCTTTTGGCTTCCAGGC 5743146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583262474594400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |