Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq309 134 1e-26 seq6 123 2e-23 seq154 116 3e-21 seq423 104 2e-17 seq38 104 2e-17 seq366 86.0 6e-12 seq31 84.2 2e-11 >seq309 Length=1536079 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||| ||||| || | | Sbjct 714833 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGAC 714774 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||||||||| || || |||| || |||||| || | |||| Sbjct 714773 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 714714 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | |||||| | ||| ||| Sbjct 714713 ATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACC 714654 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| ||||| ||||| | || ||||| || |||||||| Sbjct 714653 TCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||| ||||| || Sbjct 713467 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC---- 713412 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||||||||| ||||| |||| || ||||| || | |||| Sbjct 713411 AAAGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 713352 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | |||||| | ||| ||| Sbjct 713351 ATACCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACC 713292 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| ||||| ||||| | || ||||| || |||||||| Sbjct 713291 TCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq6 Length=12818899 Score = 123 bits (136), Expect = 2e-23 Identities = 154/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 2580467 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 2580408 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | | ||| |||||| ||||||| ||| | | | Sbjct 2580407 GATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATT 2580348 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || ||||| || || |||||||| Sbjct 2580347 CTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCAC 2580288 Query 35725 AAATATCTGCATTCTGTG-CGCACACACAC 35753 || ||||||||| | || | ||||||||| Sbjct 2580287 GAAGATCTGCATTGTCTGTCACACACACAC 2580258 >seq154 Length=6791889 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || ||||| |||||| |||| || | | Sbjct 1707865 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGAC 1707806 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||||||||| || || ||| || |||||| || | |||| Sbjct 1707805 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGA 1707746 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | | ||| ||| |||||| ||| | | || | | |||||| | ||| ||| Sbjct 1707745 ATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACC 1707686 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | | |||| ||||| ||||| | || ||||| ||||||||||| Sbjct 1707685 TCGAGCATGATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 >seq423 Length=2413410 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||| ||||| || | | Sbjct 7513 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGAC 7454 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||||||||| | || ||| || |||||| || | |||| Sbjct 7453 AAAGTACGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGA 7394 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || |||||| ||| | | || | | ||||| | ||| | | Sbjct 7393 ATTCCTTCCTTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATC 7334 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || || | || ||||| || |||||||| Sbjct 7333 TCAAGTGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287 >seq38 Length=12148825 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| |||| | ||| | || ||||| |||||| |||| || | | Sbjct 10460998 CCACCACGAAGTCTCGACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGAC 10461057 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||||||||| || || ||| || |||||| || | |||| Sbjct 10461058 AAAGTACGTCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGA 10461117 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||||| ||| | | || | | ||||| | ||| ||| Sbjct 10461118 ATTCCTTCCTTATCCTGGATCTGGGCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACC 10461177 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| ||||| ||| | | || |||||||| |||| ||| Sbjct 10461178 TCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACAAAAATCTTCAT 10461224 >seq366 Length=4409749 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | || ||||| || || || ||| || || |||||||| || | | Sbjct 1116207 CCACCACGTAGGCGCAGCACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGAC 1116266 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| | | || ||||||||||| || |||||||||| || ||||||||| | || Sbjct 1116267 AGGGTGTGGCCATCCTCCAGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGG 1116326 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || |||||| ||| | | | | | ||||| || | || ||| Sbjct 1116327 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 1116386 Query 35690 TCCACCGTGATCGTTTT 35706 || | ||||| || || Sbjct 1116387 TCAAGAGTGATGGTCTT 1116403 >seq31 Length=11202321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| || | ||||||||||| | || | || ||| || Sbjct 8040986 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTA 8041045 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| ||| | | | | | ||||| || | ||||| |||| ||||| Sbjct 8041046 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 8041105 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || || || |||| || ||||| || ||||||||| || Sbjct 8041106 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 8041144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450619362638680