Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq131 93.3 6e-14 >seq131 Length=6132816 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 214001 ATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTTACGAA 214060 ||||| || || || ||||||||||| ||||| || | ||| | ||| | ||| Sbjct 4277143 ATTGATGGCGAGGTGTACCCTCCTACAGTCAAAGACACTGAGGTGGAAATGATCTACCCC 4277084 Query 214061 CCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCC 214120 || | || || | | || || || |||| | ||| | ||||| || || || Sbjct 4277083 CCTCACACCCCTGAGCACCTGCGGTTTGCTGTGGGCCAGGAGGTCTTTGGTCTGGTACCT 4277024 Query 214121 GGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTG 214180 ||| | ||| |||| || | |||||||| | ||||||||||| || ||||| |||||| Sbjct 4277023 GGTCTGATGATGTATGCTACGATCTGGCTTCGGGAGCACAACAGAGTGTGCGATGTGCTG 4276964 Query 214181 AAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGATCA 214226 |||| ||||| || || ||| |||| || | | ||||||| || Sbjct 4276963 AAACGGGAGCATCCTGAGTGGGACGATGAGAGGTTATTCCAGACCA 4276918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723061219739040