Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1345 297 3e-75 seq498 255 8e-63 seq657 123 3e-23 seq78 105 9e-18 >seq1345 Length=786133 Score = 297 bits (328), Expect = 3e-75 Identities = 587/870 (67%), Gaps = 29/870 (3%) Strand=Plus/Minus Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 |||||| || || || | ||||| || || || || || | ||| | ||| |||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAA 39447 |||||| ||||| | ||| | | || | | || ||||| || | || |||| Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 39448 TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 39507 || || | |||||||| ||||| ||||||| | | ||||| || || || || Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 39508 AACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGA 39567 || || | |||||||| || ||||| | || || | ||| | | ||||| Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966 Query 39568 TGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTC 39627 ||||| || || || || | | || || ||||| | |||||| ||||| Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTC 220906 Query 39628 ACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAG 39687 |||||||| |||||||||||| || || | || || |||||||| || || ||||| || Sbjct 220905 ACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAAG 220846 Query 39688 ACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTAC 39747 || ||||| || ||||| ||||| | |||||||| |||||||||||||||||||| || Sbjct 220845 TCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCAC 220786 Query 39748 TGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGC 39807 || ||||| || |||| | ||||| |||||| || ||| ||| | Sbjct 220785 GGCGGCAAAGGCCACAACACATTCTCC-------------ATATGTAGCCCCTT-TGTCC 220740 Query 39808 CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTT 39867 ||| | || || |||||||| |||| |||||||| |||||||| | | Sbjct 220739 CCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCCT 220691 Query 39868 TTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTT 39927 || | ||||||| |||| || || | ||||| |||||||| ||||| || || Sbjct 220690 CTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATATT 220635 Query 39928 TTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACA 39987 ||| || | || || || || || ||||| | | || || | ||| || ||| | Sbjct 220634 TTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGCT 220575 Query 39988 AAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATAC 40047 ||| || | |||| || ||||| ||||| | ||||| || ||||| || ||| || Sbjct 220574 GAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAAC 220515 Query 40048 ATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGA 40107 ||| |||| || | | ||| |||| ||| | ||||| | ||||| || || Sbjct 220514 ATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATCCTTGGA 220455 Query 40108 TATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 | || || || ||||| |||||||| || ||||| | || |||||||| | ||| || Sbjct 220454 AAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGAT 220395 Query 40168 ATCACGATATTGTATTGGAAAAATAACAAA 40197 |||| | |||| || ||||| || ||||| Sbjct 220394 ATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 255 bits (282), Expect = 8e-63 Identities = 619/934 (66%), Gaps = 69/934 (7%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT----GACATAACTCCCATTT 39326 ||| || ||| |||| || | ||||| ||| ||| ||| ||||| || ||||| Sbjct 2186312 TTAGAAATCAGCATCCAAGGTAAAATAATTCTCTG-TTGAACTCGACATCAC-CCCATCC 2186369 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | ||||| || || | || ||||| || || | || || ||||| | ||| ||||||| Sbjct 2186370 TCTGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAATATTTT 2186428 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 ||||||| | ||| ||||| | | ||| || ||||| Sbjct 2186429 CCATGAAGTGAAATGGATTCTCTAC------------TTTGAA------------AATCA 2186464 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 || ||||| ||||| || ||||| ||||||| || ||||| || ||||| | Sbjct 2186465 GCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAGCT 2186524 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | |||||||| || |||| | || || || || | ||||| Sbjct 2186525 TCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAATTATTT 2186584 Query 39567 ATGTTACTACCTCATCACTCGGTGGAT---GCAATAAATGTTTAAACATTAAGCAGGCGA 39623 | |||| |||| | | || ||| | | | | || || ||||| | |||||| | Sbjct 2186585 CTTTTAC--CCTCTGCTC-CGATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAA 2186641 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 ||||||| |||| |||||| ||||| || || | || || |||||||| || || |||| Sbjct 2186642 AGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCA 2186701 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 | || || |||| |||||||| ||||| | | ||||| || ||||||||||||| Sbjct 2186702 TCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATGCCTT 2186758 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT-TATGT-----ATCC 39797 | || || ||||| || |||| | |||| ||| |||| | | | ||| |||| Sbjct 2186759 CCACGGCGGCAAAGGCGACAACACGTTCTCTGTA---TGTAGCCTCTTTGTCCCAAATCC 2186815 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | | ||||| || || |||||||| ||| ||||||| |||||||||||| | |||| Sbjct 2186816 AACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGA 2186875 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 |||| | | || | | |||||||| || || || || | ||||| |||||||| | Sbjct 2186876 GATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAG 2186935 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 |||| |||||||| || || || || || || || ||||| | || || || | ||| | Sbjct 2186936 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAA 2186995 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 | ||| | ||||| | |||| || ||||| ||||| | ||||| || || || | Sbjct 2186996 CTTCTTGGCTAAATC---GCTCCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGA 2187052 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGA 40097 | || || || ||||||| | | || | |||| ||| ||||| | || Sbjct 2187053 AAGCACGAACGTGAGGTATAAAATGTCTCTCCT-GGGTTTCAGAGCTCCCCAGTGCTGGA 2187111 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 ||||||| || | || ||||| || ||||| || || ||||||| Sbjct 2187112 TATCTTTGGAAA----------------GGTTCAAAAGGAGGCCTCCGCTTTCTTGTACA 2187155 Query 40158 TGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 ||| ||| |||||| | |||| || ||||| || Sbjct 2187156 TGTGCCAGATATCATGGTATTTGATGGGAAACAT 2187189 >seq657 Length=1571634 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || || || |||||||| || ||||||||||| ||||| | || Sbjct 954653 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 954594 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 954593 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 954534 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 954533 TTTCTTACACCAT 954521 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||||||||||||||| ||||| || || ||||| || | || | ||| Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | |||||| | | || || | ||||| |||| Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 |||| || ||||| || | |||||||| || ||||| ||||| || ||||||||||| | Sbjct 940722 TAGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGT 940663 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 |||| |||||||| || | || |||||| | ||||| || | | || | ||||| Sbjct 940662 TGTAGGTTTCAATTGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCA 940603 Query 70109 ACATATGCTGAGGTCGTTC 70127 ||||||| || |||| ||| Sbjct 940602 ACATATGTTGTGGTCTTTC 940584 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||||| | Sbjct 935527 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 935468 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | |||||||||||||| | ||||| | || || ||| | || ||||| | ||||| | Sbjct 935467 TGGCATAGTCAGGATGCTTCGTAGTCAAGGTTGCCGCTGTCTCTGCAGCCAGAGTATCCA 935408 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || || ||||| || |||||||||| Sbjct 935407 GTTCCACTGTGGTGACCCCACTGTACAGGCCTTGGATTACTTTCATGG 935360 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 948263 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 948204 Query 69577 CA 69578 || Sbjct 948203 CA 948202 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| ||||||||||| || | || | ||||| ||||| || || || || Sbjct 951260 GAGCCCTCATACGTTTCATAAGGGCCATACTCCTTTGCTAGGTCACAGCTGGCTTCCAAA 951201 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| || |||| |||||| | || |||||| | || || Sbjct 951200 GCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCTTCTGGGCTCTCA 951141 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | || || || |||||||| | || || || ||||| || || || Sbjct 951140 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACTCCAATTCCAATGGGC 951081 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | ||||| || Sbjct 951080 CGATGGCGTTTATTGGA 951064 >seq78 Length=6419775 Score = 105 bits (116), Expect = 9e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | || || |||||||| || || ||||| || || ||||| | Sbjct 5585561 CCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCT 5585620 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||||| || ||||| ||||| |||||||||||||| || || || || | Sbjct 5585621 TGAGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGG 5585680 Query 39759 CAACAA 39764 | |||| Sbjct 5585681 CCACAA 5585686 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT----GACATAACTCCCATTT 39326 ||| || ||| |||| || | |||| ||| ||| ||| ||||| || ||||| Sbjct 5583567 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCCCCATCC 5583625 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | |||||||| || || || ||||| || || || || || ||||| | ||| ||||||| Sbjct 5583626 TCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 5583685 Query 39387 CCATGAAATCAAACGGATT 39405 ||||||| ||||| ||||| Sbjct 5583686 CCATGAAGTCAAATGGATT 5583704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686643301162440