Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq498 217 1e-51 seq1345 215 4e-51 seq287 178 1e-39 seq78 105 5e-18 seq457 104 2e-17 seq184 86.0 5e-12 >seq498 Length=2542268 Score = 217 bits (240), Expect = 1e-51 Identities = 408/592 (69%), Gaps = 42/592 (7%) Strand=Plus/Minus Query 43704 TCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCAT 43763 || ||||||| || |||| ||||| || ||||| |||||||| ||||| |||| || | Sbjct 2187191 TCATGTTTCCCATCAAATACCATGATATCTGGCACATGTACAAGAAAGCGGAGGCCTCCT 2187132 Query 43764 TTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAA 43821 |||| || ||| | ||||| | ||||| ||| || | || Sbjct 2187131 TTTGAACC--------------TTT--CCAAAGATATCCAGCACTGGGGA--GCTCTGAA 2187090 Query 43822 ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGAT 43881 ||| || || | |||||||||| || ||| || || || || ||||| ||| | || Sbjct 2187089 ACC-CAGGAGAGACATTTTATACCTCACGTTCGTGCTTTCTTCGCAGCGAGTGACAGCAT 2187031 Query 43882 AGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATG 43941 ||||||||| || |||| || || ||| |||||||||||| | |||| || || || Sbjct 2187030 AGTCAATGAGAACTTGG--AG-CGATTTAGCCAAGAAGTTCAAGTCACAGAGGCCCGCTG 2186974 Query 43942 TTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 ||| ||||| || ||||||||||| ||||| || ||||| |||||||||||||| || || Sbjct 2186973 TTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTACAGTCTCCTTAT 2186914 Query 44002 AGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAATGCGATAGAAAC 44058 || || ||||| |||||| | |||| || ||| | || | ||| |||||||| Sbjct 2186913 TGACACCTACATTAAAGATTCTAAGGAGAGGGAGTATC---TCTTCATTGCTATAGAAAC 2186857 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATT----CAA--A 44112 | ||| | | || | || || ||||||||| | ||||| || ||| | Sbjct 2186856 GATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCCTTGCGTTGGAT---TTGGGACAAAGA 2186800 Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 | | | | ||||||| ||||||| ||||| | ||||||||||| ||||| || Sbjct 2186799 GGCTACATACAGAGAACGTGTTGTCGCCTTTGCCGCCGTGGAAGGCATCTTCTT---CGG 2186743 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 || || | | ||||| ||| | ||||| | || ||||||| || | || ||||| Sbjct 2186742 TTCTTTCACATCAATATTCTGGCTCAAGAAGCAGGGACTGATGCCCGGCCTTACATTTTC 2186683 Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||| | || || | || || |||||||| || || ||||| ||| || Sbjct 2186682 CAATGAGCTTATCAGCAGAGACGAGGGCTTACACTGTGACTTTGCCTGCCTG 2186631 >seq1345 Length=786133 Score = 215 bits (238), Expect = 4e-51 Identities = 404/591 (68%), Gaps = 41/591 (7%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || |||| ||||| || ||||| |||||||| |||| |||| Sbjct 220365 TTTGTCATCTTTCCCATCAAATACCATGATATCTGGCAGATGTACAAGAAAGATGAGGCC 220424 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || |||||||| || || || || || | | || || | || || ||| || Sbjct 220425 TCCTTTTGGACGGCTGAGGAGGTGGACCTTTCCAAGGATATTCAGTAC--TGGGAAGCTC 220482 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | ||||| || | |||| ||||| || ||| ||| || ||||| || || ||| Sbjct 220483 TGAAACCCAGTGAGAGACATGTTATACCTCATGTTCGGGCTTTCTTTGCAGCAAGTGACA 220542 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937 | ||||||||||| || ||||| | | || |||||||||||| | |||| | | Sbjct 220543 GCATAGTCAATGAGAACTTGGTGAAACTATTCAGCCAAGAAGTTCAAGTCACAGAGGTCC 220602 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 | ||||| ||||| || ||||||| |||||||||||| ||||| |||||||||||||| | Sbjct 220603 GCTGTTTCTATGGCTTCCAAATTGGCATAGAAAATATACATTCTGAAATGTACAGTCTCC 220662 Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAATGCGATAG 44054 | || || |||| |||||| | |||| || ||| | || ||||| || | Sbjct 220663 TTATTGA----CACATTAAAGATTCCAAGGAGAGGGAGTATC---TCTTCAATGCTATTG 220715 Query 44055 AAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAAT 44113 ||| | || |||| | || |||||| | ||| || Sbjct 220716 AAAAGATGCCTTGCGTT----------GC--ACTGGGGAC--AAAGGG------------ 220749 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | ||||||| | |||| || ||||| | ||||||||||| |||||||| || Sbjct 220750 GCTACATATGGAGAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGT 220809 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| | ||||| ||| | ||||| || || | ||||| || | || ||||| Sbjct 220810 TCTTTTGCATCAATATTCTGGCTGAAGAAGCGGGGACTTATGCCCGGCCTTACATTTTCC 220869 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||| | || || | ||||| ||||||||||| || ||||| ||| || Sbjct 220870 AATGAGCTTATCAGCAGAGATGAGGGCTTACATTGTGACTTTGCCTGCCTG 220920 >seq287 Length=5621345 Score = 178 bits (196), Expect = 1e-39 Identities = 312/449 (69%), Gaps = 14/449 (3%) Strand=Plus/Minus Query 77241 TCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTG 77300 |||| | || | |||||||| |||||| || || ||||| | |||| | ||| || | Sbjct 5107146 TCGCGTCTTCCCTTGCCAGCCTGTCGGCTTCTTCGTTGCCCACGAATCCGGAGTGACCAG 5107087 Query 77301 GGATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCAT 77360 | ||||||| ||| | |||| || |||| | |||||||| ||| ||||| | Sbjct 5107086 GAATGTGCATCCACGTGATGTCCATGCCCTGGGTGAGCTTGTCCAGCTCCATGAAGTCCT 5107027 Query 77361 CCTTGTTGACAAC---TGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCT 77417 ||||||||| || | |||| | | || | |||||||||||| ||||||| || Sbjct 5107026 CCTTGTTGATCACGTCTTGCCCTGCAC--TGGTTC-TCCAGCCGTTCTTCTTCCAGCCCT 5106970 Query 77418 TAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCT 77477 |||||| | || | |||||||||||||||||||||||||| || | |||||||| Sbjct 5106969 GAACCCAGCTGGTTATCCCATTGATGGTGAACATGCTGTCTGTATAAAGAACCAGCTTGC 5106910 Query 77478 TGATTTTGTTCT----CCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCG 77533 |||| ||||| |||| ||||| | |||||| | || || ||||| || || Sbjct 5106909 TGAT---GTTCTGAGCCCTG-GCTTGCATGATGGCTTTGCAGGCTGCATGGATCTCGGCC 5106854 Query 77534 CGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCC 77593 | ||||||||||||| |||| ||||| | ||||| | ||||| ||| Sbjct 5106853 CTCTGGTTTGTCTGTCGCCCAGGAAGTCTAATACCTACATTTAAGGGGTGGCCGGGCCCC 5106794 Query 77594 CAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCA 77653 || || |||||||| || |||| || | ||||| ||||| |||| ||||| || Sbjct 5106793 CAGTAAACGCCAATTCCTGCTCTCGCCCGCTTCTGCCCGTTACTGGAGCAGCAGCCATCC 5106734 Query 77654 GTGTAGACCACCACGGCGTCACCCATGTA 77682 |||||||| || | | || ||||| || Sbjct 5106733 GTGTAGACAACATCTGACTCTCCCATATA 5106705 >seq78 Length=6419775 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||||||| | | || || || ||||| ||||| || ||||||||||| ||||| Sbjct 5587148 CAGGAAGTTCAAGTCACGGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 5587089 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| ||||| || || ||||| |||||| Sbjct 5587088 ATACATTCTGAAATGTACAGTCTCCTGATTGACACCTACATTAAAGAT 5587041 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/148 (73%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| | || || ||||| || |||||||||||||| | ||||| || |||||||| ||| Sbjct 5583710 GTAGAGAATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACAAACTTCTTT 5583651 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCAT---GATAACAAGTGACAATAAA 44605 || || || || || ||||| ||| | ||||| || || || ||| || ||| Sbjct 5583650 GAGAAGCGAGTGGGCGAATACCAGAGGATGGGGGTGATGTCGAGTTCAACAGAGAATTCT 5583591 Query 44606 TTTACTACGGATGAAGATTTCTAATTAA 44633 ||||| ||||| ||||||||| ||| Sbjct 5583590 TTTACCTTGGATGCTGATTTCTAAGTAA 5583563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || || || | ||||||||||| ||||| || || || || || Sbjct 5585696 GGAGAACGTGTTGTGGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCA 5585637 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||| ||| | ||||| || || ||||||| || | || ||||| |||||| | Sbjct 5585636 TCCATATTCTGGCTCAAGAAGCGGGGACTGATGCCCGGCCTTACATTTTCCAATGAGCTT 5585577 Query 44243 ATAAG 44247 || || Sbjct 5585576 ATCAG 5585572 >seq457 Length=2943904 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| || || ||| | |||||||| || || ||||| || |||| Sbjct 1188330 TGATGGCACTGCCTCCCTGCCATGCCCTCTGTCAGTTCTATGTGGTGAATGGGGAGCTGT 1188271 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || | ||||| |||||||| || || || || |||||||| || | Sbjct 1188270 CTTGCCAGCTTTACCAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTTAACATCGCCA 1188211 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| |||||||| || |||||||||||| Sbjct 1188210 GCTATGCCCTGCTCACCTACATGATTGCACAC 1188179 >seq184 Length=3314118 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 1986962 AAAATCCCTTTGATTTTATGGAAAACATTTCATTAGAAGGGAAAACAAATTTCTTTGAGA 1986903 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| ||| || |||||||| | | |||||| Sbjct 1986902 AACGAGTTTCTGAGTATCAGCGCTTTGCAGTCATG 1986868 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | || || ||| ||||||||||| ||||||||| Sbjct 2008546 GGTTTGTCATCTTTCCAATCCAGTACCCCGATATTTGGAAAATGTACAAACAAGCACAGG 2008487 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 2008486 CATCTTTCTGGACAGCAGAAGAGGT 2008462 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/134 (74%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || | || || || || | ||||||||||||||||| || || || ||||| Sbjct 1994209 GGAGA--GAGTGGTGGCCTTCGCCGCCGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCT 1994152 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| ||| | ||||| |||| | ||||| || | || |||||||||||| | Sbjct 1994151 GCTATATTCTGGCTGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTTTCAAATGAGCTC 1994092 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 1994091 ATCAGCAGGGATGA 1994078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397306218830605