Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq498 217 1e-51
seq1345 215 4e-51
seq287 178 1e-39
seq78 105 5e-18
seq457 104 2e-17
seq184 86.0 5e-12
>seq498
Length=2542268
Score = 217 bits (240), Expect = 1e-51
Identities = 408/592 (69%), Gaps = 42/592 (7%)
Strand=Plus/Minus
Query 43704 TCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCAT 43763
|| ||||||| || |||| ||||| || ||||| |||||||| ||||| |||| || |
Sbjct 2187191 TCATGTTTCCCATCAAATACCATGATATCTGGCACATGTACAAGAAAGCGGAGGCCTCCT 2187132
Query 43764 TTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAA 43821
|||| || ||| | ||||| | ||||| ||| || | ||
Sbjct 2187131 TTTGAACC--------------TTT--CCAAAGATATCCAGCACTGGGGA--GCTCTGAA 2187090
Query 43822 ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGAT 43881
||| || || | |||||||||| || ||| || || || || ||||| ||| | ||
Sbjct 2187089 ACC-CAGGAGAGACATTTTATACCTCACGTTCGTGCTTTCTTCGCAGCGAGTGACAGCAT 2187031
Query 43882 AGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATG 43941
||||||||| || |||| || || ||| |||||||||||| | |||| || || ||
Sbjct 2187030 AGTCAATGAGAACTTGG--AG-CGATTTAGCCAAGAAGTTCAAGTCACAGAGGCCCGCTG 2186974
Query 43942 TTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001
||| ||||| || ||||||||||| ||||| || ||||| |||||||||||||| || ||
Sbjct 2186973 TTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTACAGTCTCCTTAT 2186914
Query 44002 AGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAATGCGATAGAAAC 44058
|| || ||||| |||||| | |||| || ||| | || | ||| ||||||||
Sbjct 2186913 TGACACCTACATTAAAGATTCTAAGGAGAGGGAGTATC---TCTTCATTGCTATAGAAAC 2186857
Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATT----CAA--A 44112
| ||| | | || | || || ||||||||| | ||||| || ||| |
Sbjct 2186856 GATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCCTTGCGTTGGAT---TTGGGACAAAGA 2186800
Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172
| | | | ||||||| ||||||| ||||| | ||||||||||| ||||| ||
Sbjct 2186799 GGCTACATACAGAGAACGTGTTGTCGCCTTTGCCGCCGTGGAAGGCATCTTCTT---CGG 2186743
Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232
|| || | | ||||| ||| | ||||| | || ||||||| || | || |||||
Sbjct 2186742 TTCTTTCACATCAATATTCTGGCTCAAGAAGCAGGGACTGATGCCCGGCCTTACATTTTC 2186683
Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|||||| | || || | || || |||||||| || || ||||| ||| ||
Sbjct 2186682 CAATGAGCTTATCAGCAGAGACGAGGGCTTACACTGTGACTTTGCCTGCCTG 2186631
>seq1345
Length=786133
Score = 215 bits (238), Expect = 4e-51
Identities = 404/591 (68%), Gaps = 41/591 (7%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | ||||| || |||| ||||| || ||||| |||||||| |||| ||||
Sbjct 220365 TTTGTCATCTTTCCCATCAAATACCATGATATCTGGCAGATGTACAAGAAAGATGAGGCC 220424
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817
|| |||||||| || || || || || | | || || | || || ||| ||
Sbjct 220425 TCCTTTTGGACGGCTGAGGAGGTGGACCTTTCCAAGGATATTCAGTAC--TGGGAAGCTC 220482
Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877
| ||||| || | |||| ||||| || ||| ||| || ||||| || || |||
Sbjct 220483 TGAAACCCAGTGAGAGACATGTTATACCTCATGTTCGGGCTTTCTTTGCAGCAAGTGACA 220542
Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937
| ||||||||||| || ||||| | | || |||||||||||| | |||| | |
Sbjct 220543 GCATAGTCAATGAGAACTTGGTGAAACTATTCAGCCAAGAAGTTCAAGTCACAGAGGTCC 220602
Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997
| ||||| ||||| || ||||||| |||||||||||| ||||| |||||||||||||| |
Sbjct 220603 GCTGTTTCTATGGCTTCCAAATTGGCATAGAAAATATACATTCTGAAATGTACAGTCTCC 220662
Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAATGCGATAG 44054
| || || |||| |||||| | |||| || ||| | || ||||| || |
Sbjct 220663 TTATTGA----CACATTAAAGATTCCAAGGAGAGGGAGTATC---TCTTCAATGCTATTG 220715
Query 44055 AAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAAT 44113
||| | || |||| | || |||||| | ||| ||
Sbjct 220716 AAAAGATGCCTTGCGTT----------GC--ACTGGGGAC--AAAGGG------------ 220749
Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173
| | | | ||||||| | |||| || ||||| | ||||||||||| |||||||| ||
Sbjct 220750 GCTACATATGGAGAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGT 220809
Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233
|| ||||| | ||||| ||| | ||||| || || | ||||| || | || |||||
Sbjct 220810 TCTTTTGCATCAATATTCTGGCTGAAGAAGCGGGGACTTATGCCCGGCCTTACATTTTCC 220869
Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|||||| | || || | ||||| ||||||||||| || ||||| ||| ||
Sbjct 220870 AATGAGCTTATCAGCAGAGATGAGGGCTTACATTGTGACTTTGCCTGCCTG 220920
>seq287
Length=5621345
Score = 178 bits (196), Expect = 1e-39
Identities = 312/449 (69%), Gaps = 14/449 (3%)
Strand=Plus/Minus
Query 77241 TCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTG 77300
|||| | || | |||||||| |||||| || || ||||| | |||| | ||| || |
Sbjct 5107146 TCGCGTCTTCCCTTGCCAGCCTGTCGGCTTCTTCGTTGCCCACGAATCCGGAGTGACCAG 5107087
Query 77301 GGATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCAT 77360
| ||||||| ||| | |||| || |||| | |||||||| ||| ||||| |
Sbjct 5107086 GAATGTGCATCCACGTGATGTCCATGCCCTGGGTGAGCTTGTCCAGCTCCATGAAGTCCT 5107027
Query 77361 CCTTGTTGACAAC---TGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCT 77417
||||||||| || | |||| | | || | |||||||||||| ||||||| ||
Sbjct 5107026 CCTTGTTGATCACGTCTTGCCCTGCAC--TGGTTC-TCCAGCCGTTCTTCTTCCAGCCCT 5106970
Query 77418 TAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCT 77477
|||||| | || | |||||||||||||||||||||||||| || | ||||||||
Sbjct 5106969 GAACCCAGCTGGTTATCCCATTGATGGTGAACATGCTGTCTGTATAAAGAACCAGCTTGC 5106910
Query 77478 TGATTTTGTTCT----CCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCG 77533
|||| ||||| |||| ||||| | |||||| | || || ||||| || ||
Sbjct 5106909 TGAT---GTTCTGAGCCCTG-GCTTGCATGATGGCTTTGCAGGCTGCATGGATCTCGGCC 5106854
Query 77534 CGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCC 77593
| ||||||||||||| |||| ||||| | ||||| | ||||| |||
Sbjct 5106853 CTCTGGTTTGTCTGTCGCCCAGGAAGTCTAATACCTACATTTAAGGGGTGGCCGGGCCCC 5106794
Query 77594 CAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCA 77653
|| || |||||||| || |||| || | ||||| ||||| |||| ||||| ||
Sbjct 5106793 CAGTAAACGCCAATTCCTGCTCTCGCCCGCTTCTGCCCGTTACTGGAGCAGCAGCCATCC 5106734
Query 77654 GTGTAGACCACCACGGCGTCACCCATGTA 77682
|||||||| || | | || ||||| ||
Sbjct 5106733 GTGTAGACAACATCTGACTCTCCCATATA 5106705
>seq78
Length=6419775
Score = 105 bits (116), Expect = 5e-18
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|| ||||||||| | | || || || ||||| ||||| || ||||||||||| |||||
Sbjct 5587148 CAGGAAGTTCAAGTCACGGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 5587089
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| |||||||||||||| ||||| || || ||||| ||||||
Sbjct 5587088 ATACATTCTGAAATGTACAGTCTCCTGATTGACACCTACATTAAAGAT 5587041
Score = 86.0 bits (94), Expect = 5e-12
Identities = 108/148 (73%), Gaps = 3/148 (2%)
Strand=Plus/Minus
Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548
||| | || || ||||| || |||||||||||||| | ||||| || |||||||| |||
Sbjct 5583710 GTAGAGAATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACAAACTTCTTT 5583651
Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCAT---GATAACAAGTGACAATAAA 44605
|| || || || || ||||| ||| | ||||| || || || ||| || |||
Sbjct 5583650 GAGAAGCGAGTGGGCGAATACCAGAGGATGGGGGTGATGTCGAGTTCAACAGAGAATTCT 5583591
Query 44606 TTTACTACGGATGAAGATTTCTAATTAA 44633
||||| ||||| ||||||||| |||
Sbjct 5583590 TTTACCTTGGATGCTGATTTCTAAGTAA 5583563
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| |||| || || || | ||||||||||| ||||| || || || || ||
Sbjct 5585696 GGAGAACGTGTTGTGGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCA 5585637
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
||||||| ||| | ||||| || || ||||||| || | || ||||| |||||| |
Sbjct 5585636 TCCATATTCTGGCTCAAGAAGCGGGGACTGATGCCCGGCCTTACATTTTCCAATGAGCTT 5585577
Query 44243 ATAAG 44247
|| ||
Sbjct 5585576 ATCAG 5585572
>seq457
Length=2943904
Score = 104 bits (114), Expect = 2e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
|||||||| |||| || || ||| | |||||||| || || ||||| || ||||
Sbjct 1188330 TGATGGCACTGCCTCCCTGCCATGCCCTCTGTCAGTTCTATGTGGTGAATGGGGAGCTGT 1188271
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || || | || || | ||||| |||||||| || || || || |||||||| || |
Sbjct 1188270 CTTGCCAGCTTTACCAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTTAACATCGCCA 1188211
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198
| ||||| |||||||| || ||||||||||||
Sbjct 1188210 GCTATGCCCTGCTCACCTACATGATTGCACAC 1188179
>seq184
Length=3314118
Score = 86.0 bits (94), Expect = 5e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 1986962 AAAATCCCTTTGATTTTATGGAAAACATTTCATTAGAAGGGAAAACAAATTTCTTTGAGA 1986903
Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
|||| ||| || |||||||| | | ||||||
Sbjct 1986902 AACGAGTTTCTGAGTATCAGCGCTTTGCAGTCATG 1986868
Score = 86.0 bits (94), Expect = 5e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757
|||||||| | |||||||| || || | || || ||| ||||||||||| |||||||||
Sbjct 2008546 GGTTTGTCATCTTTCCAATCCAGTACCCCGATATTTGGAAAATGTACAAACAAGCACAGG 2008487
Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782
| || || |||||||||||||| ||
Sbjct 2008486 CATCTTTCTGGACAGCAGAAGAGGT 2008462
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/134 (74%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
||||| || | || || || || | ||||||||||||||||| || || || |||||
Sbjct 1994209 GGAGA--GAGTGGTGGCCTTCGCCGCCGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCT 1994152
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
|| ||||| ||| | ||||| |||| | ||||| || | || |||||||||||| |
Sbjct 1994151 GCTATATTCTGGCTGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTTTCAAATGAGCTC 1994092
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 1994091 ATCAGCAGGGATGA 1994078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397306218830605
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