Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq309 100 2e-16
seq423 82.4 6e-11
>seq309
Length=1536079
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094
||| || | ||| | || || || |||||||||||||| || || | || | ||
Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760
Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||| ||||| ||||| ||| | || || | ||| ||||| || || | ||| || |||||
Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
||||||| || | |||||| ||||| | || |||||| || || || || |
Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| ||||| || || ||||| || || |||||
Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094
||| || | ||| | || || || |||||||||||||| ||| | || | ||
Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTA----TTCAAAGTACGACCATC 713398
Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||| ||||| ||||| || | || || | || ||||| || || | ||| || |||||
Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
||||||| || | |||||| ||||| | || |||||| || || || || |
Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| ||||| || || ||||| || || |||||
Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
>seq423
Length=2413410
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094
||| || | ||| | || || || |||||||||||||| || || | || | ||
Sbjct 7499 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 7440
Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||| ||||| ||||| | | | || | | ||| ||||| || || | || || ||| |
Sbjct 7439 TTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAGC 7380
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
||||||| || | |||||| ||||||| || ||||| || || || || |
Sbjct 7379 CTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTGATGGT 7320
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| || || || || ||||| ||||| |||||
Sbjct 7319 TTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424774263604152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |