Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq309 100 2e-16 seq423 82.4 6e-11 >seq309 Length=1536079 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| || | ||| | || || || |||||||||||||| || || | || | || Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| ||||| ||||| ||| | || || | ||| ||||| || || | ||| || ||||| Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||||| || | |||||| ||||| | || |||||| || || || || | Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| || || ||||| || || ||||| Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| || | ||| | || || || |||||||||||||| ||| | || | || Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTA----TTCAAAGTACGACCATC 713398 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| ||||| ||||| || | || || | || ||||| || || | ||| || ||||| Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||||| || | |||||| ||||| | || |||||| || || || || | Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| || || ||||| || || ||||| Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq423 Length=2413410 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| || | ||| | || || || |||||||||||||| || || | || | || Sbjct 7499 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 7440 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| ||||| ||||| | | | || | | ||| ||||| || || | || || ||| | Sbjct 7439 TTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAGC 7380 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||||| || | |||||| ||||||| || ||||| || || || || | Sbjct 7379 CTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTGATGGT 7320 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || || ||||| ||||| ||||| Sbjct 7319 TTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424774263604152