Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq657 82.4 1e-10 >seq657 Length=1571634 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||||| |||||||| || | |||| | || || || || Sbjct 950075 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCC 950016 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || || | ||||| |||||| || || | ||| |||||||||||||| || || || Sbjct 950015 CAGGTTTTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCC 949956 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||||| ||||| |||| | || || | ||||| Sbjct 949955 CGTCTCTGTCTGAGATTCAATGATGGCATACCAAA 949921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627789257781600