Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq184 86.0 7e-12 seq78 86.0 7e-12 >seq184 Length=3314118 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||||||||| || ||||||||||| || || |||||| |||||||| || ||| | || Sbjct 1994185 CGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCTGCTATATTCTGGCTGAAGAAGAGAGG 1994126 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||||||||| || || | ||| || || ||||| || | |||| |||| Sbjct 1994125 CCTCATGCCCGGACTCACTTTTTCAAATGAGCTCATCAGCAGGGATGAGG 1994076 >seq78 Length=6419775 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||||||||| |||||||||||||| || ||| | || ||||||||||| ||||| || Sbjct 5585670 CGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCATCCATATTCTGGCTCAAGAAGCGGGG 5585611 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| ||||| | || ||||| ||||| || | | ||||||| Sbjct 5585610 ACTGATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCAGAGACGAGG 5585561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548312788308240