Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq184 86.0 7e-12
seq78 86.0 7e-12
>seq184
Length=3314118
Score = 86.0 bits (94), Expect = 7e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061
||||||||| || ||||||||||| || || |||||| |||||||| || ||| | ||
Sbjct 1994185 CGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCTGCTATATTCTGGCTGAAGAAGAGAGG 1994126
Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111
||||||||| || || | ||| || || ||||| || | |||| ||||
Sbjct 1994125 CCTCATGCCCGGACTCACTTTTTCAAATGAGCTCATCAGCAGGGATGAGG 1994076
>seq78
Length=6419775
Score = 86.0 bits (94), Expect = 7e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061
||||||||| |||||||||||||| || ||| | || ||||||||||| ||||| ||
Sbjct 5585670 CGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCATCCATATTCTGGCTCAAGAAGCGGGG 5585611
Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111
|| ||||| ||||| | || ||||| ||||| || | | |||||||
Sbjct 5585610 ACTGATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCAGAGACGAGG 5585561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548312788308240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |