Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1345 105 7e-18 seq54 104 3e-17 seq78 95.1 1e-14 seq498 93.3 5e-14 seq17 82.4 8e-11 >seq1345 Length=786133 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| |||| ||||||||||| || | ||||| ||||| | |||||| Sbjct 220914 GGCAAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCC 220855 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||||||||| |||||||||| ||| || || | || |||||| |||||||| Sbjct 220854 GGGCATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGAT 220795 Query 74870 GCCTTCGACACACGCAAAGGCGACAA 74895 |||||| || |||||||| |||| Sbjct 220794 GCCTTCCACGGCGGCAAAGGCCACAA 220769 >seq54 Length=10603641 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 6910206 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 6910147 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | |||||| |||||| ||||||||||||||||||||| Sbjct 6910146 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 6910087 Query 152149 ATCGT 152153 || || Sbjct 6910086 ATAGT 6910082 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 6910206 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 6910147 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||| || |||||||| || ||| Sbjct 6910146 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 6910087 Query 117425 ATCGT 117429 || || Sbjct 6910086 ATAGT 6910082 >seq78 Length=6419775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| || | ||||| ||||| | |||||| ||||| ||||| |||||||| Sbjct 5585563 TCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCTTG 5585622 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || |||| ||| |||||| ||||||||||||||| || || ||||| Sbjct 5585623 AGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGGCC 5585682 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 5585683 ACAACACGTT 5585692 >seq498 Length=2542268 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 74767 AGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCT 74826 |||| || |||||||| || | ||||| ||||| | |||||| ||||| ||||| ||| Sbjct 2186654 AGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCT 2186713 Query 74827 TCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAA 74886 |||| | ||| || || | ||| ||||| ||||||||||||||| || |||| Sbjct 2186714 TCTTGAGCCAGAATATTGATGTGAAAGAACC---GAAGAAGATGCCTTCCACGGCGGCAA 2186770 Query 74887 AGGCGACAAGGCGTT 74901 ||||||||| |||| Sbjct 2186771 AGGCGACAACACGTT 2186785 >seq17 Length=11688273 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 607819 GTAAAGATGTATCGAGGACTAGCTGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 607760 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | |||||| | || || ||||| ||||||||||||||||| | | Sbjct 607759 CCAATGGGTTGCAAGAGGTTCAAATTATTACTACCCACAAAATTCTGAGCCAAATTGATA 607700 Query 152149 ATCGT 152153 || || Sbjct 607699 ATGGT 607695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547004494175800