Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 105 7e-18
seq54 104 3e-17
seq78 95.1 1e-14
seq498 93.3 5e-14
seq17 82.4 8e-11
>seq1345
Length=786133
Score = 105 bits (116), Expect = 7e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809
|||||| || ||| |||| ||||||||||| || | ||||| ||||| | ||||||
Sbjct 220914 GGCAAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCC 220855
Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869
||||||||||| |||||||||| ||| || || | || |||||| ||||||||
Sbjct 220854 GGGCATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGAT 220795
Query 74870 GCCTTCGACACACGCAAAGGCGACAA 74895
|||||| || |||||||| ||||
Sbjct 220794 GCCTTCCACGGCGGCAAAGGCCACAA 220769
>seq54
Length=10603641
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 6910206 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 6910147
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| || | ||| | |||||| |||||| |||||||||||||||||||||
Sbjct 6910146 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 6910087
Query 152149 ATCGT 152153
|| ||
Sbjct 6910086 ATAGT 6910082
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||||||| ||| || || || || ||
Sbjct 6910206 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 6910147
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | |||||| ||||||||| || |||||||| || |||
Sbjct 6910146 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 6910087
Query 117425 ATCGT 117429
|| ||
Sbjct 6910086 ATAGT 6910082
>seq78
Length=6419775
Score = 95.1 bits (104), Expect = 1e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
|| |||||||| || | ||||| ||||| | |||||| ||||| ||||| ||||||||
Sbjct 5585563 TCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCTTG 5585622
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| ||| || |||| ||| |||||| ||||||||||||||| || || |||||
Sbjct 5585623 AGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGGCC 5585682
Query 74892 ACAAGGCGTT 74901
|||| ||||
Sbjct 5585683 ACAACACGTT 5585692
>seq498
Length=2542268
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 74767 AGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCT 74826
|||| || |||||||| || | ||||| ||||| | |||||| ||||| ||||| |||
Sbjct 2186654 AGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCT 2186713
Query 74827 TCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAA 74886
|||| | ||| || || | ||| ||||| ||||||||||||||| || ||||
Sbjct 2186714 TCTTGAGCCAGAATATTGATGTGAAAGAACC---GAAGAAGATGCCTTCCACGGCGGCAA 2186770
Query 74887 AGGCGACAAGGCGTT 74901
||||||||| ||||
Sbjct 2186771 AGGCGACAACACGTT 2186785
>seq17
Length=11688273
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| ||||||||||| | || || | |||||||||||| ||||| || ||||||||
Sbjct 607819 GTAAAGATGTATCGAGGACTAGCTGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 607760
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||| | | |||||| | || || ||||| ||||||||||||||||| | |
Sbjct 607759 CCAATGGGTTGCAAGAGGTTCAAATTATTACTACCCACAAAATTCTGAGCCAAATTGATA 607700
Query 152149 ATCGT 152153
|| ||
Sbjct 607699 ATGGT 607695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547004494175800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |