Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq423 143 3e-29
seq309 140 4e-28
seq70 136 5e-27
seq154 125 8e-24
seq38 125 8e-24
seq31 123 3e-23
seq3 123 3e-23
seq366 116 4e-21
seq37 116 4e-21
seq120 113 5e-20
seq410 89.7 6e-13
seq872 86.0 7e-12
seq184 84.2 2e-11
seq533 82.4 9e-11
>seq423
Length=2413410
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| ||||| || || || || || |||||| |||| |
Sbjct 7287 ATGCAGATCTTCGTGAAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTCA 7346
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | |||| | ||||| || || |||| ||||| ||||||||||| || |||
Sbjct 7347 GACACCATAGAAAATGTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCAG 7406
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || || |||||||||| || || |||| ||||| | | || || |||
Sbjct 7407 CAGAGGCGGATCTTCACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 7466
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||| |||||||| || ||| | ||||| |||||
Sbjct 7467 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 7513
>seq309
Length=1536079
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || || || || || || || |||||||| |
Sbjct 714607 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 714666
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | ||||| || || ||||| ||||| || |||||||| || |||
Sbjct 714667 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 714726
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || || ||||||||||| || || |||| ||||| | | || || |||
Sbjct 714727 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 714786
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||| |||||||| || ||| | ||||| |||||
Sbjct 714787 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 714833
Score = 138 bits (152), Expect = 1e-27
Identities = 167/227 (74%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || || || || || || || |||||||| |
Sbjct 713245 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 713304
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | ||||| || || ||||| ||||| || |||||||| || |||
Sbjct 713305 GACACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 713364
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||||||||||||| || || |||| |||||| | || || |||
Sbjct 713365 CAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTT----GAATACAAT 713420
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||| |||||||| || ||| | ||||| |||||
Sbjct 713421 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 713467
>seq70
Length=7483708
Score = 136 bits (150), Expect = 5e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | ||
Sbjct 5585918 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCTAGT 5585859
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| || || || |||||||| | || || |||||||||
Sbjct 5585858 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGACCAG 5585799
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| || || |||||||| || || || |||||| | ||||| |||| || ||
Sbjct 5585798 CAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAAAAC 5585739
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| || || ||||| | || || || |||| ||
Sbjct 5585738 ATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGCCT 5585701
>seq154
Length=6791889
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || || || || || | || |||||||| |
Sbjct 1707639 ATGCAGATATTCGTGAAGACCCTCACGGGGAAAACCATCATGCTCGAGGTTGAACCCTCG 1707698
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | ||||| || || ||||| ||| | ||||||||||| || |||
Sbjct 1707699 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATCAG 1707758
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || | || ||||||||||| || || |||| ||||| | | ||||| | |
Sbjct 1707759 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGT 1707818
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||| |||| ||||| |||||||| || ||| | ||||| |||||
Sbjct 1707819 ATTCAATAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 1707865
>seq38
Length=12148825
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||| | || ||||| ||||| |||| || || || || || || |||||||| |
Sbjct 10461224 ATGAAGATTTTTGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCTTCG 10461165
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | ||||| | || ||||| ||||| ||||||||||| || |||
Sbjct 10461164 GACACTATAGAAAATGTAAAGGCCCAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 10461105
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || | || ||||||||||| || || |||| ||||| | | ||||| | |
Sbjct 10461104 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAGT 10461045
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||| |||| ||||| |||||||| || | | | ||||| |||||
Sbjct 10461044 ATTCAATAGGAGTCCACCCTTCATCTTGTGTCGAGACTTCGTGGTGG 10460998
>seq31
Length=11202321
Score = 123 bits (136), Expect = 3e-23
Identities = 128/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || ||||| || ||||||||||| || || || || || ||| | |
Sbjct 8041141 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAG 8041082
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | ||| | ||||| || || ||||| || ||||| || || || |||||
Sbjct 8041081 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 8041022
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572
|||||| || || |||||||| ||||| || || |||| || |||||
Sbjct 8041021 GCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCT 8040974
Score = 102 bits (112), Expect = 9e-17
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541
||||||| || || ||||| || ||||| || || |||||||||||||| || || ||||
Sbjct 8040091 TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAGCAGCGACTCATCTTTG 8040032
Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601
| || ||||| || || |||| || || || | ||||| || |||| || || ||||
Sbjct 8040031 CCGGCAAGCAGCTGGAAGATGGGCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCA 8039972
Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || || || ||| | ||||| | |||||
Sbjct 8039971 CCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 8039941
>seq3
Length=5748141
Score = 123 bits (136), Expect = 3e-23
Identities = 165/228 (72%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || ||||||| || ||||| ||||| ||| | ||
Sbjct 3927523 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGAACATCACTCTAGAGGTCGAGCCTAGT 3927464
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | |||| || || || || ||||| || || || |||||||||
Sbjct 3927463 GACACCATCGAGAATGTCAAGGTCAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 3927404
Query 27526 CAGCGTCTAAT-TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| | || || ||||| | ||||| || | |||| || ||||| ||||||| ||
Sbjct 3927403 CAGAGGCTGATAATTTGCCAGCAAGCAGCTGGGTGATGGCCGCACCCTGTCAGACTACAA 3927344
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || || || || |||| || | |||||
Sbjct 3927343 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCCTGGTGG 3927296
>seq366
Length=4409749
Score = 116 bits (128), Expect = 4e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATT 27495
||||| || ||||||||||| ||| | |||| | ||||| ||| | ||||| || ||
Sbjct 1116403 AAGACCATCACTCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATC 1116344
Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555
|| || ||||| || || || |||||||||||| | || || ||||| || ||||| ||
Sbjct 1116343 CAAGATAAGGAAGGCATCCCACCAGACCAGCAGAGGCTGATATTTGCCGGAAAGCAGCTG 1116284
Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615
||||||| | ||||| | ||||| || |||| || || | ||| | || || ||
Sbjct 1116283 GAGGATGGCCACACCCTGTCGGACTACAACATCCAGAAAGAGTTCACCTTGCACCTGGTG 1116224
Query 27616 TTGCGTCTTCGCGGTGG 27632
|||| || || |||||
Sbjct 1116223 CTGCGCCTACGTGGTGG 1116207
>seq37
Length=11501336
Score = 116 bits (128), Expect = 4e-21
Identities = 163/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || ||| ||||||| || || || ||||| ||| | |
Sbjct 11476885 AATGCAAATCTTCGTGAAGACCCTGACCAGCAAGACCATCACCCTAGAGGTGGAGCCTAG 11476826
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| ||| | ||| | ||||| || || ||||| | ||||| || | || |||||
Sbjct 11476825 TGATACCATCGAGAATGTCAAGGCCAAGATCCAGGATGAAGAGGGCATCCTCCCTGACCA 11476766
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| || || || ||| | || ||||| || || |||| || || || | ||||| |
Sbjct 11476765 GCAACGACTCATCTTTTCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACA- 11476707
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || | ||||| || || || ||| | |||| | |||||
Sbjct 11476706 --TCCAGAAAGGGTCCACCCTGCACCTGGTCCTCTGTCTGAGGGGTGG 11476661
>seq120
Length=4857412
Score = 113 bits (124), Expect = 5e-20
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGGTGATAG 27470
||||| || ||||| || | |||||||| || ||||||||||| || ||| |||| |
Sbjct 3874248 ATCTTCGTGAAGACCCTGAGGGGCAAGACCATCACTCTTGAGGTCTAGCTCA-GTGACAC 3874306
Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530
||| ||| | |||||||| || || |||||||| || || | || ||||||||| |
Sbjct 3874307 CATCAAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCTACCTGACCAGCAGAG 3874366
Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590
|| | |||||||| ||||| || ||||||| | || || | ||||| || ||||
Sbjct 3874367 GCTGACATTTGCTGGCAAGCAGCTGGAGGATGGCGGCACTCTGTCGGACTACAACATCCA 3874426
Query 27591 AAAGGAATCCACTCTT-CATCTAGT--CTTGC 27619
|| || |||| |||| ||||| || |||||
Sbjct 3874427 GAAAGAGTCCA-TCTTGCATCTGGTGCCTTGC 3874457
>seq410
Length=930769
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | ||
Sbjct 638344 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 638403
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | ||| | ||||| || || ||||||||||| ||
Sbjct 638404 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGG 638447
>seq872
Length=978185
Score = 86.0 bits (94), Expect = 7e-12
Identities = 109/149 (73%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || | || || |||||||| |||||||| || ||||| | | || | |||
Sbjct 164994 AAGGCCAAGAATCGGGGTAAGGAGGGGATTCCTCCTGATGAGCAGAGGTTGATCCT-GCT 165052
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|||||||| || || |||| |||| | | ||||| || | |||||||| ||||||
Sbjct 165053 GGTAAGCAGCTGGAAGATGGCTGTACTTTGTCTGACTACAAAATTCAAAAGGAGTCCACT 165112
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||| |||| || ||| ||||| |||||
Sbjct 165113 CTTTATCTTGTGTTGAAACTTCGTGGTGG 165141
>seq184
Length=3314118
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797
|||||||| |||||||| ||||||||||| | |||| |||||||| || ||| | |||
Sbjct 1994184 GTGGAAGGCATTTTCTTCTCTGGGTCATTTGCTGCTATATTCTGGCTGAAGAAGAGAGGC 1994125
Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGG 64846
|| ||||| || || | ||||| || ||||| ||| |||| ||||
Sbjct 1994124 CTCATGCCCGGACTCACTTTTTCAAATGAGCTCATCAGCAGGGATGAGG 1994076
>seq533
Length=941535
Score = 82.4 bits (90), Expect = 9e-11
Identities = 122/171 (71%), Gaps = 3/171 (2%)
Strand=Plus/Plus
Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461
|| ||||||||||| || |||| || ||| ||||||| ||||| || ||||| ||| |
Sbjct 315728 TAAAATGCAAATCTGGGTGAAGATTCTGACCAGCAAGACCATTACCCTAGAGGTGGAGCC 315787
Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA-ATTCCTCCAG 27520
||| | || | |||| ||||||| || | ||||| ||||||| | | || || |
Sbjct 315788 CATTGACACCACAGAAAATGTGAAGGCCAAGGTCCAGGATAAGGAGGCACCTCCCACCCG 315847
Query 27521 --ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569
|||||||| | | || | ||| || ||||| || | ||||| | |||
Sbjct 315848 CAACCAGCAGAGGCCCATCTCTGCAGGCAAGCAGCTGGCAGATGACCATAC 315898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570089967901520
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