Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq423 143 3e-29 seq309 140 4e-28 seq70 136 5e-27 seq154 125 8e-24 seq38 125 8e-24 seq31 123 3e-23 seq3 123 3e-23 seq366 116 4e-21 seq37 116 4e-21 seq120 113 5e-20 seq410 89.7 6e-13 seq872 86.0 7e-12 seq184 84.2 2e-11 seq533 82.4 9e-11 >seq423 Length=2413410 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| || || || || || |||||| |||| | Sbjct 7287 ATGCAGATCTTCGTGAAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTCA 7346 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||| || || |||| ||||| ||||||||||| || ||| Sbjct 7347 GACACCATAGAAAATGTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCAG 7406 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || |||||||||| || || |||| ||||| | | || || ||| Sbjct 7407 CAGAGGCGGATCTTCACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 7466 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| |||||||| || ||| | ||||| ||||| Sbjct 7467 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 7513 >seq309 Length=1536079 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || || || || || || |||||||| | Sbjct 714607 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 714666 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| || |||||||| || ||| Sbjct 714667 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 714726 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||||||||| || || |||| ||||| | | || || ||| Sbjct 714727 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 714786 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| |||||||| || ||| | ||||| ||||| Sbjct 714787 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 714833 Score = 138 bits (152), Expect = 1e-27 Identities = 167/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || || || || || || |||||||| | Sbjct 713245 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 713304 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| || |||||||| || ||| Sbjct 713305 GACACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 713364 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||||||||| || || |||| |||||| | || || ||| Sbjct 713365 CAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTT----GAATACAAT 713420 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| |||||||| || ||| | ||||| ||||| Sbjct 713421 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 713467 >seq70 Length=7483708 Score = 136 bits (150), Expect = 5e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | || Sbjct 5585918 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCTAGT 5585859 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || |||||||| | || || ||||||||| Sbjct 5585858 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGACCAG 5585799 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| || || |||||||| || || || |||||| | ||||| |||| || || Sbjct 5585798 CAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAAAAC 5585739 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| | || || || |||| || Sbjct 5585738 ATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGCCT 5585701 >seq154 Length=6791889 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || || || || | || |||||||| | Sbjct 1707639 ATGCAGATATTCGTGAAGACCCTCACGGGGAAAACCATCATGCTCGAGGTTGAACCCTCG 1707698 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||| | ||||||||||| || ||| Sbjct 1707699 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATCAG 1707758 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || | || ||||||||||| || || |||| ||||| | | ||||| | | Sbjct 1707759 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGT 1707818 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| |||| ||||| |||||||| || ||| | ||||| ||||| Sbjct 1707819 ATTCAATAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 1707865 >seq38 Length=12148825 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | || ||||| ||||| |||| || || || || || || |||||||| | Sbjct 10461224 ATGAAGATTTTTGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCTTCG 10461165 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 10461164 GACACTATAGAAAATGTAAAGGCCCAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 10461105 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || | || ||||||||||| || || |||| ||||| | | ||||| | | Sbjct 10461104 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAGT 10461045 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| |||| ||||| |||||||| || | | | ||||| ||||| Sbjct 10461044 ATTCAATAGGAGTCCACCCTTCATCTTGTGTCGAGACTTCGTGGTGG 10460998 >seq31 Length=11202321 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||||||||| || || || || || ||| | | Sbjct 8041141 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAG 8041082 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || ||||| || ||||| || || || ||||| Sbjct 8041081 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 8041022 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 |||||| || || |||||||| ||||| || || |||| || ||||| Sbjct 8041021 GCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCT 8040974 Score = 102 bits (112), Expect = 9e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || || ||||| || ||||| || || |||||||||||||| || || |||| Sbjct 8040091 TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAGCAGCGACTCATCTTTG 8040032 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| || || |||| || || || | ||||| || |||| || || |||| Sbjct 8040031 CCGGCAAGCAGCTGGAAGATGGGCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCA 8039972 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || ||| | ||||| | ||||| Sbjct 8039971 CCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 8039941 >seq3 Length=5748141 Score = 123 bits (136), Expect = 3e-23 Identities = 165/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||| || ||||| ||||| ||| | || Sbjct 3927523 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGAACATCACTCTAGAGGTCGAGCCTAGT 3927464 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | |||| || || || || ||||| || || || ||||||||| Sbjct 3927463 GACACCATCGAGAATGTCAAGGTCAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 3927404 Query 27526 CAGCGTCTAAT-TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||| | ||||| || | |||| || ||||| ||||||| || Sbjct 3927403 CAGAGGCTGATAATTTGCCAGCAAGCAGCTGGGTGATGGCCGCACCCTGTCAGACTACAA 3927344 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || || |||| || | ||||| Sbjct 3927343 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCCTGGTGG 3927296 >seq366 Length=4409749 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATT 27495 ||||| || ||||||||||| ||| | |||| | ||||| ||| | ||||| || || Sbjct 1116403 AAGACCATCACTCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATC 1116344 Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 || || ||||| || || || |||||||||||| | || || ||||| || ||||| || Sbjct 1116343 CAAGATAAGGAAGGCATCCCACCAGACCAGCAGAGGCTGATATTTGCCGGAAAGCAGCTG 1116284 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| | ||||| | ||||| || |||| || || | ||| | || || || Sbjct 1116283 GAGGATGGCCACACCCTGTCGGACTACAACATCCAGAAAGAGTTCACCTTGCACCTGGTG 1116224 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || || ||||| Sbjct 1116223 CTGCGCCTACGTGGTGG 1116207 >seq37 Length=11501336 Score = 116 bits (128), Expect = 4e-21 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||| ||||||| || || || ||||| ||| | | Sbjct 11476885 AATGCAAATCTTCGTGAAGACCCTGACCAGCAAGACCATCACCCTAGAGGTGGAGCCTAG 11476826 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | ||| | ||||| || || ||||| | ||||| || | || ||||| Sbjct 11476825 TGATACCATCGAGAATGTCAAGGCCAAGATCCAGGATGAAGAGGGCATCCTCCCTGACCA 11476766 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || || || ||| | || ||||| || || |||| || || || | ||||| | Sbjct 11476765 GCAACGACTCATCTTTTCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACA- 11476707 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || | ||||| || || || ||| | |||| | ||||| Sbjct 11476706 --TCCAGAAAGGGTCCACCCTGCACCTGGTCCTCTGTCTGAGGGGTGG 11476661 >seq120 Length=4857412 Score = 113 bits (124), Expect = 5e-20 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGGTGATAG 27470 ||||| || ||||| || | |||||||| || ||||||||||| || ||| |||| | Sbjct 3874248 ATCTTCGTGAAGACCCTGAGGGGCAAGACCATCACTCTTGAGGTCTAGCTCA-GTGACAC 3874306 Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||| ||| | |||||||| || || |||||||| || || | || ||||||||| | Sbjct 3874307 CATCAAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCTACCTGACCAGCAGAG 3874366 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 || | |||||||| ||||| || ||||||| | || || | ||||| || |||| Sbjct 3874367 GCTGACATTTGCTGGCAAGCAGCTGGAGGATGGCGGCACTCTGTCGGACTACAACATCCA 3874426 Query 27591 AAAGGAATCCACTCTT-CATCTAGT--CTTGC 27619 || || |||| |||| ||||| || ||||| Sbjct 3874427 GAAAGAGTCCA-TCTTGCATCTGGTGCCTTGC 3874457 >seq410 Length=930769 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | || Sbjct 638344 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 638403 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | ||||| || || ||||||||||| || Sbjct 638404 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGG 638447 >seq872 Length=978185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || | || || |||||||| |||||||| || ||||| | | || | ||| Sbjct 164994 AAGGCCAAGAATCGGGGTAAGGAGGGGATTCCTCCTGATGAGCAGAGGTTGATCCT-GCT 165052 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 |||||||| || || |||| |||| | | ||||| || | |||||||| |||||| Sbjct 165053 GGTAAGCAGCTGGAAGATGGCTGTACTTTGTCTGACTACAAAATTCAAAAGGAGTCCACT 165112 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| |||| || ||| ||||| ||||| Sbjct 165113 CTTTATCTTGTGTTGAAACTTCGTGGTGG 165141 >seq184 Length=3314118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 |||||||| |||||||| ||||||||||| | |||| |||||||| || ||| | ||| Sbjct 1994184 GTGGAAGGCATTTTCTTCTCTGGGTCATTTGCTGCTATATTCTGGCTGAAGAAGAGAGGC 1994125 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGG 64846 || ||||| || || | ||||| || ||||| ||| |||| |||| Sbjct 1994124 CTCATGCCCGGACTCACTTTTTCAAATGAGCTCATCAGCAGGGATGAGG 1994076 >seq533 Length=941535 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/171 (71%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || ||||||||||| || |||| || ||| ||||||| ||||| || ||||| ||| | Sbjct 315728 TAAAATGCAAATCTGGGTGAAGATTCTGACCAGCAAGACCATTACCCTAGAGGTGGAGCC 315787 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA-ATTCCTCCAG 27520 ||| | || | |||| ||||||| || | ||||| ||||||| | | || || | Sbjct 315788 CATTGACACCACAGAAAATGTGAAGGCCAAGGTCCAGGATAAGGAGGCACCTCCCACCCG 315847 Query 27521 --ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 |||||||| | | || | ||| || ||||| || | ||||| | ||| Sbjct 315848 CAACCAGCAGAGGCCCATCTCTGCAGGCAAGCAGCTGGCAGATGACCATAC 315898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570089967901520