Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq966 111 2e-19 >seq966 Length=1419223 Score = 111 bits (122), Expect = 2e-19 Identities = 247/369 (67%), Gaps = 4/369 (1%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| || |||||||||| ||||| || || || || || ||| | || ||||| Sbjct 876612 GCCCCTTAGTAAAGAAGAGGTCGGCTTTCCAATTGCATATTCCATAGTGGTTCATCACAA 876671 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 ||| || ||| | || | ||||||||||||||||| || ||||| |||||||| | Sbjct 876672 GATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCAT 876731 Query 13790 CCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 || |||||| || | | || | || | || | || || ||| || Sbjct 876732 TCATGTGGACAAAAAAGCAGAGGAATCCTTTTTAGCC--GCAGTGGTGGGCATTGCATCC 876789 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 ||||| ||| || ||||| || | || | | || || || | ||||||||| Sbjct 876790 TGCTTTGGTAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATGCATCCTGGAGT 876849 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || |||||||| ||||||| ||| ||| ||||||| || | || |||| | Sbjct 876850 CGGGTGCAGGCTGACCTCAACTGTATGAAGGACCTGTACAGAATGAGTGCAAACTGGAAG 876909 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| || |||| || || || ||||| ||||| | || |||||||| || || || || Sbjct 876910 TACTTGATCAATCTTTGTGGTATGGATTTCCCTATTAAAACCAACCTAGAAATTGTCAGG 876969 Query 14028 GCGCTGAAG 14036 ||| ||| Sbjct 876970 AAGCTCAAG 876978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658484589064960