Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq966 111 2e-19
>seq966
Length=1419223
Score = 111 bits (122), Expect = 2e-19
Identities = 247/369 (67%), Gaps = 4/369 (1%)
Strand=Plus/Plus
Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729
|||||| || |||||||||| ||||| || || || || || ||| | || |||||
Sbjct 876612 GCCCCTTAGTAAAGAAGAGGTCGGCTTTCCAATTGCATATTCCATAGTGGTTCATCACAA 876671
Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789
||| || ||| | || | ||||||||||||||||| || ||||| |||||||| |
Sbjct 876672 GATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCAT 876731
Query 13790 CCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847
|| |||||| || | | || | || | || | || || ||| ||
Sbjct 876732 TCATGTGGACAAAAAAGCAGAGGAATCCTTTTTAGCC--GCAGTGGTGGGCATTGCATCC 876789
Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907
||||| ||| || ||||| || | || | | || || || | |||||||||
Sbjct 876790 TGCTTTGGTAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATGCATCCTGGAGT 876849
Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967
|| |||||||| ||||||| ||| ||| ||||||| || | || |||| |
Sbjct 876850 CGGGTGCAGGCTGACCTCAACTGTATGAAGGACCTGTACAGAATGAGTGCAAACTGGAAG 876909
Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027
||| || |||| || || || ||||| ||||| | || |||||||| || || || ||
Sbjct 876910 TACTTGATCAATCTTTGTGGTATGGATTTCCCTATTAAAACCAACCTAGAAATTGTCAGG 876969
Query 14028 GCGCTGAAG 14036
||| |||
Sbjct 876970 AAGCTCAAG 876978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658484589064960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |