Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq457 136 3e-27
seq6307 82.4 6e-11
seq144 82.4 6e-11
>seq457
Length=2943904
Score = 136 bits (150), Expect = 3e-27
Identities = 129/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||||||||
Sbjct 1188168 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGC 1188227
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || |||| |||||| ||||| || || ||||| || | |
Sbjct 1188228 ACGCCCAGGCCCATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 1188287
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106
|| || |||||||| | ||| ||||| ||||| || ||||| |||
Sbjct 1188288 ACATAGAACTGACAGAGGGCATGGCAGGGAGGCAGTGCCATCAGG 1188332
Score = 113 bits (124), Expect = 4e-20
Identities = 128/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
|||||| |||| |||||||| ||||| ||||||||||| ||||| || || ||||||||
Sbjct 1194023 CATGTCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTC 1194082
Query 30283 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
|| || | || |||| ||| ||| |||||| ||| |||| ||| || ||||| |
Sbjct 1194083 CCCTTCCTGCC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 1194141
Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||||||| | || ||||| || || ||||| | |||||||||||
Sbjct 1194142 CCCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGACCC 1194190
>seq6307
Length=6747
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| ||||| |||||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 2085 TTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 2144
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| || || | ||||| ||||||| ||||| || |||
Sbjct 2145 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 2192
>seq144
Length=4920231
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| ||||| |||||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 4541637 TTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 4541578
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| || || | ||||| ||||||| ||||| || |||
Sbjct 4541577 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 4541530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406157282052732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |