Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq457 141 8e-29
>seq457
Length=2943904
Score = 141 bits (156), Expect = 8e-29
Identities = 128/161 (80%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || |||||||| |||||||| || || || || ||||| || ||||| || | |||
Sbjct 1188180 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGCACGCCCAGGCCC 1188239
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|||||||| || || || || |||||||| ||||||||||||||| | || ||||| ||
Sbjct 1188240 ATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAACTGA 1188299
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| ||||| || || || |||||||| || |||||
Sbjct 1188300 CAGAGGGCATGGCAGGGAGGCAGTGCCATCAGGGGAAGATC 1188340
Score = 141 bits (156), Expect = 8e-29
Identities = 128/161 (80%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| || |||||||| || || || ||||| ||||||| || ||||| || | ||||
Sbjct 1188340 GATCTTCCCCTGATGGCACTGCCTCCCTGCCATGCCCTCTGTCAGTTCTATGTGGTGAAT 1188281
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
||||||||||| |||||||| || || || || ||||||||||| | || ||||| ||
Sbjct 1188280 GGGGAGCTGTCTTGCCAGCTTTACCAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTT 1188221
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || || || |||||||| |||||||| || ||
Sbjct 1188220 AACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 1188180
Score = 111 bits (122), Expect = 1e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || || ||||| |||||||||||||| ||||| || ||||||| ||| || |||| |
Sbjct 1194033 TAGTCTGCTCCAAAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTCCCCTTCCTGC 1194092
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
|| | | ||| ||| | |||||||||| ||||| ||||| | || |||||||| ||
Sbjct 1194093 CGTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTC 1194152
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057
|| ||| ||| || || || || | || |||| ||||
Sbjct 1194153 ACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGACCCC 1194191
Score = 111 bits (122), Expect = 1e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347
|||| |||| || | || || || || ||| ||| |||| |||||||| || | ||
Sbjct 1194191 GGGGTCCACAAATGCTAAAGAACTGTCCTCCAAGGGAGTGAGAATCTGGGATGCCAATGG 1194132
Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCC 34407
||| ||||| |||||||||| | ||| ||| | | ||| |||| || ||| |||||||
Sbjct 1194131 GTCCCGAGATTTTCTGGACAGCCTGGGATTCTCTGCACGGCAGGAAGGGGACCTGGGCCC 1194072
Query 34408 GGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
|| ||||| |||||||||||||| ||||| || || ||
Sbjct 1194071 CGTTTACGGTTTCCAGTGGAGACATTTTGGAGCAGACTA 1194033
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841
|| |||||||| || ||||| | ||| ||||||||||||||||| || | ||||||
Sbjct 1189029 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 1189088
Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882
||||| | ||||||||||| |||| || ||||| || ||
Sbjct 1189089 ATCACTTTTTGCAGCTGGTCAACTCCTTGACCCGAGTAATC 1189129
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522
|| || ||||| || |||| ||||||||||| | ||||| |||||| | || |||
Sbjct 1189129 GATTACTCGGGTCAAGGAGTTGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAAC 1189070
Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563
|||||||||||||| ||| | ||||| || |||||||| ||
Sbjct 1189069 CCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAA 1189029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448089140979120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |