Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq457 141 8e-29 >seq457 Length=2943904 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| || || || || ||||| || ||||| || | ||| Sbjct 1188180 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGCACGCCCAGGCCC 1188239 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || || || || |||||||| ||||||||||||||| | || ||||| || Sbjct 1188240 ATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAACTGA 1188299 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || |||||||| || ||||| Sbjct 1188300 CAGAGGGCATGGCAGGGAGGCAGTGCCATCAGGGGAAGATC 1188340 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| ||||||| || ||||| || | |||| Sbjct 1188340 GATCTTCCCCTGATGGCACTGCCTCCCTGCCATGCCCTCTGTCAGTTCTATGTGGTGAAT 1188281 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| |||||||| || || || || ||||||||||| | || ||||| || Sbjct 1188280 GGGGAGCTGTCTTGCCAGCTTTACCAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTT 1188221 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || |||||||| |||||||| || || Sbjct 1188220 AACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 1188180 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| |||||||||||||| ||||| || ||||||| ||| || |||| | Sbjct 1194033 TAGTCTGCTCCAAAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTCCCCTTCCTGC 1194092 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| | |||||||||| ||||| ||||| | || |||||||| || Sbjct 1194093 CGTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTC 1194152 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057 || ||| ||| || || || || | || |||| |||| Sbjct 1194153 ACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGACCCC 1194191 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 |||| |||| || | || || || || ||| ||| |||| |||||||| || | || Sbjct 1194191 GGGGTCCACAAATGCTAAAGAACTGTCCTCCAAGGGAGTGAGAATCTGGGATGCCAATGG 1194132 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCC 34407 ||| ||||| |||||||||| | ||| ||| | | ||| |||| || ||| ||||||| Sbjct 1194131 GTCCCGAGATTTTCTGGACAGCCTGGGATTCTCTGCACGGCAGGAAGGGGACCTGGGCCC 1194072 Query 34408 GGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||| |||||||||||||| ||||| || || || Sbjct 1194071 CGTTTACGGTTTCCAGTGGAGACATTTTGGAGCAGACTA 1194033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| || ||||| | ||| ||||||||||||||||| || | |||||| Sbjct 1189029 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 1189088 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 ||||| | ||||||||||| |||| || ||||| || || Sbjct 1189089 ATCACTTTTTGCAGCTGGTCAACTCCTTGACCCGAGTAATC 1189129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || || ||||| || |||| ||||||||||| | ||||| |||||| | || ||| Sbjct 1189129 GATTACTCGGGTCAAGGAGTTGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAAC 1189070 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 |||||||||||||| ||| | ||||| || |||||||| || Sbjct 1189069 CCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAA 1189029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448089140979120