Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq65 196 4e-45
seq681 122 7e-23
seq457 102 7e-17
>seq65
Length=10862630
Score = 196 bits (216), Expect = 4e-45
Identities = 185/236 (78%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349
||||| |||||||| ||| ||||| ||||||||||||||||| ||||| || ||
Sbjct 8834377 ATTGTGACATGGCAGAAAAAGAAAGCCGTAAGCCCAGAAAACATGGTCACTTACAGCAAA 8834318
Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409
| ||| |||||||| || || || ||||||||||| | | ||||| |||||||| |||
Sbjct 8834317 GCCCATGGGGTTGTAGTCCAACCTGCATACAAAGACAGGGTAAACATCACTGAGCTGGGA 8834258
Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469
|| ||||||| || |||||||||||||||||| |||||||||| || ||||||| |
Sbjct 8834257 CTCTGGAACACAAGCATCACCTTCTGGAACACAACACTGGATGATGAGGGCTGCTACATG 8834198
Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525
||| | || || |||||| |||||||||| ||||||| || || || |||||
Sbjct 8834197 TGTCTCTTCAATACTTTTCTTGCTGGGAAGATCTCAGGAACAGCCTGCCTCACCCT 8834142
>seq681
Length=1722344
Score = 122 bits (134), Expect = 7e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || || |||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 215552 GTGGTGGAAGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 215493
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| || | || | |||| || ||||||
Sbjct 215492 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 215433
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 215432 ATCGCCCTGTGGATGACTGA 215413
>seq457
Length=2943904
Score = 102 bits (112), Expect = 7e-17
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| || || | ||| ||||||||||| || | || |||||||| | ||||| ||
Sbjct 1188168 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGC 1188227
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| ||||| ||||||||| |||| | |||||| | |||||||| |||||||| || |
Sbjct 1188228 ACGCCCAGGCCCATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 1188287
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||| ||||||| | | || || |||||||| ||||
Sbjct 1188288 ACATAGAACTGACAGAGGGCATGGCAGGGAGGCAGTGCCAT 1188328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414320604547444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |