Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq309 118 7e-22
seq6 95.1 8e-15
seq154 86.0 4e-12
seq70 82.4 5e-11
>seq309
Length=1536079
Score = 118 bits (130), Expect = 7e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct 714607 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 714666
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| |||| || || || || |||||| | || || |||||
Sbjct 714667 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 714726
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || || || || || || |||||||| | || ||||| || |||||
Sbjct 714727 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 714786
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|| ||||| |||||||| | ||| | || || ||
Sbjct 714787 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 714821
Score = 116 bits (128), Expect = 3e-21
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct 713245 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 713304
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| |||| || || || || |||||| | || || |||||
Sbjct 713305 GACACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 713364
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || ||||| || || || |||||||| | || ||||| || |||||
Sbjct 713365 CAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTT----GAATACAAT 713420
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|| ||||| |||||||| | ||| | || || ||
Sbjct 713421 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 713455
>seq6
Length=12818899
Score = 95.1 bits (104), Expect = 8e-15
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| |||||| | || || || || ||||| || || || || |||
Sbjct 2580275 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCGAGCCCAG 2580334
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| | || ||| | || |||| | | |||||||| ||| | || || || |
Sbjct 2580335 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAAGAGGGTATCCCCCCTGACC 2580393
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | | || ||||| ||||| || |||||||| | ||||| | || ||||
Sbjct 2580394 AGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACA 2580453
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || |||||||||||
Sbjct 2580454 ACATCCAGAAAGAGTCCAC 2580472
>seq154
Length=6791889
Score = 86.0 bits (94), Expect = 4e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| ||||| |||| ||||| ||||| || ||
Sbjct 1707639 ATGCAGATATTCGTGAAGACCCTCACGGGGAAAACCATCATGCTCGAGGTTGAACCCTCG 1707698
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| |||| || || || || |||| | || || |||||
Sbjct 1707699 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATCAG 1707758
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | | || || || || || |||||||| | || ||||| || ||||
Sbjct 1707759 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGT 1707818
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|| ||| | |||||||| | ||| | || || ||
Sbjct 1707819 ATTCAATAGGAGTCCACCCTTCATCTTGTGTTGAG 1707853
>seq70
Length=7483708
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || || ||||| ||||| || || |||||||| || || || |
Sbjct 5585921 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 5585862
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| |||| ||| | || | || | | ||||| |||| | || |||||
Sbjct 5585861 AGTGACACCATTGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGACATCCCACCAGA 5585803
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||| | |||||||| |||||||| ||||| || | ||| | |||||
Sbjct 5585802 CCAGCAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTA 5585743
Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813
||||| || ||||||||||| || ||
Sbjct 5585742 AAACATCCAGAAAGAGTCCACCTTGCA 5585716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337882221187868
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |