Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq309 118 7e-22 seq6 95.1 8e-15 seq154 86.0 4e-12 seq70 82.4 5e-11 >seq309 Length=1536079 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| || || Sbjct 714607 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 714666 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| |||| || || || || |||||| | || || ||||| Sbjct 714667 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 714726 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || || || |||||||| | || ||||| || ||||| Sbjct 714727 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 714786 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||| | || || || Sbjct 714787 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 714821 Score = 116 bits (128), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| || || Sbjct 713245 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 713304 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| |||| || || || || |||||| | || || ||||| Sbjct 713305 GACACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 713364 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || || |||||||| | || ||||| || ||||| Sbjct 713365 CAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTT----GAATACAAT 713420 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||| | || || || Sbjct 713421 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 713455 >seq6 Length=12818899 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||| | || || || || ||||| || || || || ||| Sbjct 2580275 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCGAGCCCAG 2580334 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | |||||||| ||| | || || || | Sbjct 2580335 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAAGAGGGTATCCCCCCTGACC 2580393 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| ||||| || |||||||| | ||||| | || |||| Sbjct 2580394 AGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACA 2580453 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 2580454 ACATCCAGAAAGAGTCCAC 2580472 >seq154 Length=6791889 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| ||||| |||| ||||| ||||| || || Sbjct 1707639 ATGCAGATATTCGTGAAGACCCTCACGGGGAAAACCATCATGCTCGAGGTTGAACCCTCG 1707698 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| |||| || || || || |||| | || || ||||| Sbjct 1707699 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATCAG 1707758 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | | || || || || || |||||||| | || ||||| || |||| Sbjct 1707759 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGT 1707818 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||| | |||||||| | ||| | || || || Sbjct 1707819 ATTCAATAGGAGTCCACCCTTCATCTTGTGTTGAG 1707853 >seq70 Length=7483708 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| ||||| || || |||||||| || || || | Sbjct 5585921 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 5585862 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | ||||| |||| | || ||||| Sbjct 5585861 AGTGACACCATTGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGACATCCCACCAGA 5585803 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | |||||||| |||||||| ||||| || | ||| | ||||| Sbjct 5585802 CCAGCAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTA 5585743 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 ||||| || ||||||||||| || || Sbjct 5585742 AAACATCCAGAAAGAGTCCACCTTGCA 5585716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337882221187868