Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq309 161 2e-34 seq6 141 2e-28 seq423 140 8e-28 seq154 134 3e-26 seq31 111 4e-19 seq4 98.7 2e-15 seq120 96.9 8e-15 seq3 95.1 3e-14 seq319 93.3 1e-13 seq70 93.3 1e-13 seq28 91.5 4e-13 seq366 89.7 1e-12 >seq309 Length=1536079 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || || ||||| || ||||| | |||||| || | |||||| Sbjct 714828 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGT 714769 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || | || || || || |||||||| Sbjct 714768 ACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACC 714709 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 714708 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAG 714649 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || || ||||| | || || | ||| | ||||| Sbjct 714648 CGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 147 bits (162), Expect = 5e-30 Identities = 166/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || || ||||| || ||||| | |||||| || ||||| Sbjct 713462 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC----AAAGT 713407 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| ||||| || | ||| || || || |||||||| Sbjct 713406 ACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACC 713347 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| | | ||| || ||||| |||| ||| || || | Sbjct 713346 TTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAG 713287 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || || ||||| | || || | ||| | ||||| Sbjct 713286 CGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq6 Length=12818899 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| ||||| |||| ||||| || | || || | |||||| Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || ||||| || ||||| Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| ||||||||||| || || || |||| ||||| ||| Sbjct 2580367 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTC 2580308 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||| | ||| | |||||| Sbjct 2580307 TTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275 >seq423 Length=2413410 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || || ||||| || ||||| | |||||| || | |||||| Sbjct 7508 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGT 7449 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| |||| |||||| | | || || || || ||||| || Sbjct 7448 ACGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCC 7389 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| | |||||||| ||| ||| ||| ||||||||||||| ||| | || | Sbjct 7388 TTCCTTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAG 7329 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || | || || | ||| | ||||| || Sbjct 7328 TGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTGCATCTT 7284 >seq154 Length=6791889 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || || ||||| || | ||| | | |||| || | |||||| Sbjct 1707860 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGT 1707801 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||| | || | || || || || ||||| || Sbjct 1707800 ACGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCC 1707741 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 1707740 TTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAG 1707681 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||| || || ||||| | || || | ||| | ||||| Sbjct 1707680 CATGATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 >seq31 Length=11202321 Score = 111 bits (122), Expect = 4e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| ||||| ||||| || ||||| || || || || || Sbjct 8040983 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCT 8041042 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || |||||||| ||| ||| ||||||||||| || ||||| || | ||| Sbjct 8041043 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 8041102 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || |||||||| |||| || || | ||| | |||||||| Sbjct 8041103 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 8041143 >seq4 Length=18898765 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/190 (72%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| ||||| |||| ||||| || | | ||| | | |||| Sbjct 11612658 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCTATCT 11612717 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| | || || | |||| | ||||| || ||| | || || || ||| Sbjct 11612718 TCCAGCTGCTTGCTGGCAAA--TGAGTCACTACTGGTCAGGGGGA-TGCCCTCTTTATCT 11612774 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| | |||| |||| ||||| ||| Sbjct 11612775 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTAGGCTCCATCTCTAGGGTGATGGTC 11612834 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 11612835 TTGCCAGTCA 11612844 >seq120 Length=4857412 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 225518 TGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAG 225577 |||| ||||| |||| ||||| || | || ||| | ||||| || |||||||| |||| Sbjct 3874437 TGGACTCTTTCTGGATGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTGCTTGCCAG 3874378 Query 225578 CGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCA 225637 | || | || | || ||||| || | || |||||||||||||||||||| ||| | Sbjct 3874377 CAAATGTCAGCCTCTGCTGGTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTAGCCTTGA 3874318 Query 225638 CAGCTTCGATGGTGT--CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || | |||||||| ||||| | || || | ||||| ||||||||| ||| || Sbjct 3874317 CATTCTTGATGGTGTCACTGAG--CTAGACCTCAAGAGTGATGGTCTTGCCCCTCAGGGT 3874260 Query 225696 TTTTATGAA 225704 || | ||| Sbjct 3874259 CTTCACGAA 3874251 >seq3 Length=5748141 Score = 95.1 bits (104), Expect = 3e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| ||||| |||| ||||| || | || || | ||||| Sbjct 3927310 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATC 3927369 Query 225561 TTCTAGCTGCTTCCCAGCGAAG-ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGT 225619 | |||||||| | || || || || | || ||||| || || || |||||||| | Sbjct 3927370 ACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTAT 3927429 Query 225620 CTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 |||||||||| ||| ||| ||||||||||| | || || |||| ||||| Sbjct 3927430 CTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGATGT 3927489 Query 225680 TCTTGCCCGTCA 225691 ||||||| |||| Sbjct 3927490 TCTTGCCTGTCA 3927501 >seq319 Length=3946259 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC--CCATCTTCTA 225565 ||||| | ||||| ||||| |||| ||||| || | || || | |||||||| | Sbjct 689850 AGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACA--GTACATAGCCATCTTCCA 689907 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 |||| |||| | || || |||| ||||||| || || || |||||||||||||||| Sbjct 689908 GCTGTTTCCTGACAAATATCAGTCTCTGTTGGTGAGGTGGGATGCCTTCCTTGTCTTGGA 689967 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| ||| || || |||||| || | || || | ||||| ||| ||| Sbjct 689968 TCTTAGTCTTGACATTCTCAATAGTGTCTCTGGGCTTGACCTCAAGAGTGATGGTCATGC 690027 Query 225686 CCGTCAAAGTTTTTATGAA 225704 |||| ||| || ||||| Sbjct 690028 TTGTCAGAGTCTTCATGAA 690046 >seq70 Length=7483708 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| | ||||| ||||| |||| || ||||| | || || | ||| Sbjct 5585706 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGATC 5585765 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||| || ||||| || || || || ||||| || || || |||||||||| Sbjct 5585766 CTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTC 5585825 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| || |||||||| | || || || | ||||| || Sbjct 5585826 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATGGT 5585885 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 5585886 CTTGCCCGTCA 5585896 >seq28 Length=9942386 Score = 91.5 bits (100), Expect = 4e-13 Identities = 159/227 (70%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || ||||| ||||| |||| || || || | || || Sbjct 239160 ACGCAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCAGACAGGGT 239219 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||| | |||||||| | || || || || | || || || || | || || Sbjct 239220 GCAGCCATCTCC-AGCTGCTTGCTGGCAAATATCAGCCTGTGCTGATCAGGTAGGATGCC 239278 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT--CTGAGGTTTCCACGTCT 225669 ||||||||||||| |||| ||| ||| | |||||||| ||||| ||||| || Sbjct 239279 TTCCTTGTCTTGGGTCTTGGCCTTGACATTCTTGATGGTGTCACTGAG--CTCCAC--CT 239334 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||| ||||||| || || | || | ||||| || Sbjct 239335 GGAGTGATGGTCTTGTCCGTCAAGGTCTTCACCAAGATCTGCATGTT 239381 >seq366 Length=4409749 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| | ||| | ||||| |||| ||||| || | || || Sbjct 1116212 ACGTAGGCGCAGCACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGT 1116271 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||||| || |||||||| || || || || || | || ||||| || || || || Sbjct 1116272 GTGGCCATCCTCCAGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCC 1116331 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| ||| ||| || |||||||| || || || || | Sbjct 1116332 TTCCTTATCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAG 1116391 Query 225672 CGTGATCGTCTT 225683 ||||| ||||| Sbjct 1116392 AGTGATGGTCTT 1116403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192058748579174