Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq309 161 2e-34
seq6 141 2e-28
seq423 140 8e-28
seq154 134 3e-26
seq31 111 4e-19
seq4 98.7 2e-15
seq120 96.9 8e-15
seq3 95.1 3e-14
seq319 93.3 1e-13
seq70 93.3 1e-13
seq28 91.5 4e-13
seq366 89.7 1e-12
>seq309
Length=1536079
Score = 161 bits (178), Expect = 2e-34
Identities = 169/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||||| ||||| || || ||||| || ||||| | |||||| || | ||||||
Sbjct 714828 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGT 714769
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| ||||||||||| || | || || || || ||||||||
Sbjct 714768 ACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACC 714709
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || |
Sbjct 714708 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAG 714649
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| || || ||||| | || || | ||| | |||||
Sbjct 714648 CGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 147 bits (162), Expect = 5e-30
Identities = 166/222 (75%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||||| ||||| || || ||||| || ||||| | |||||| || |||||
Sbjct 713462 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC----AAAGT 713407
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| ||||| ||||| || | ||| || || || ||||||||
Sbjct 713406 ACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACC 713347
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| || |||||||| ||| | | ||| || ||||| |||| ||| || || |
Sbjct 713346 TTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAG 713287
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| || || ||||| | || || | ||| | |||||
Sbjct 713286 CGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
>seq6
Length=12818899
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| |||||||| ||||| |||| ||||| || | || || | ||||||
Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| || | || ||||| || || ||||| || |||||
Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||||||| ||| ||| ||||||||||| || || || |||| ||||| |||
Sbjct 2580367 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTC 2580308
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || || || ||||| | ||| | ||||||
Sbjct 2580307 TTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275
>seq423
Length=2413410
Score = 140 bits (154), Expect = 8e-28
Identities = 166/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||||| ||||| || || ||||| || ||||| | |||||| || | ||||||
Sbjct 7508 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGT 7449
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| |||| |||||| | | || || || || ||||| ||
Sbjct 7448 ACGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCC 7389
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| | |||||||| ||| ||| ||| ||||||||||||| ||| | || |
Sbjct 7388 TTCCTTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAG 7329
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || || || | || || | ||| | ||||| ||
Sbjct 7328 TGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTGCATCTT 7284
>seq154
Length=6791889
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||||| ||||| || || ||||| || | ||| | | |||| || | ||||||
Sbjct 1707860 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGT 1707801
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| ||||||||| | || | || || || || ||||| ||
Sbjct 1707800 ACGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCC 1707741
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| ||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || |
Sbjct 1707740 TTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAG 1707681
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| |||| || || ||||| | || || | ||| | |||||
Sbjct 1707680 CATGATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639
>seq31
Length=11202321
Score = 111 bits (122), Expect = 4e-19
Identities = 121/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| |||||||| ||||| ||||| ||||| || ||||| || || || || ||
Sbjct 8040983 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCT 8041042
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
|| || |||||||| ||| ||| ||||||||||| || ||||| || | |||
Sbjct 8041043 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 8041102
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| |||||||| |||| || || | ||| | ||||||||
Sbjct 8041103 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 8041143
>seq4
Length=18898765
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/190 (72%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| || ||||| ||||| |||| ||||| || | | ||| | | ||||
Sbjct 11612658 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCTATCT 11612717
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| | || || | |||| | ||||| || ||| | || || || |||
Sbjct 11612718 TCCAGCTGCTTGCTGGCAAA--TGAGTCACTACTGGTCAGGGGGA-TGCCCTCTTTATCT 11612774
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||||||||| | |||| |||| ||||| |||
Sbjct 11612775 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTAGGCTCCATCTCTAGGGTGATGGTC 11612834
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 11612835 TTGCCAGTCA 11612844
>seq120
Length=4857412
Score = 96.9 bits (106), Expect = 8e-15
Identities = 136/189 (72%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 225518 TGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAG 225577
|||| ||||| |||| ||||| || | || ||| | ||||| || |||||||| ||||
Sbjct 3874437 TGGACTCTTTCTGGATGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTGCTTGCCAG 3874378
Query 225578 CGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCA 225637
| || | || | || ||||| || | || |||||||||||||||||||| ||| |
Sbjct 3874377 CAAATGTCAGCCTCTGCTGGTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTAGCCTTGA 3874318
Query 225638 CAGCTTCGATGGTGT--CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
|| | |||||||| ||||| | || || | ||||| ||||||||| ||| ||
Sbjct 3874317 CATTCTTGATGGTGTCACTGAG--CTAGACCTCAAGAGTGATGGTCTTGCCCCTCAGGGT 3874260
Query 225696 TTTTATGAA 225704
|| | |||
Sbjct 3874259 CTTCACGAA 3874251
>seq3
Length=5748141
Score = 95.1 bits (104), Expect = 3e-14
Identities = 137/192 (71%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || ||||| || ||||| ||||| |||| ||||| || | || || | |||||
Sbjct 3927310 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATC 3927369
Query 225561 TTCTAGCTGCTTCCCAGCGAAG-ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGT 225619
| |||||||| | || || || || | || ||||| || || || |||||||| |
Sbjct 3927370 ACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTAT 3927429
Query 225620 CTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679
|||||||||| ||| ||| ||||||||||| | || || |||| |||||
Sbjct 3927430 CTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGATGT 3927489
Query 225680 TCTTGCCCGTCA 225691
||||||| ||||
Sbjct 3927490 TCTTGCCTGTCA 3927501
>seq319
Length=3946259
Score = 93.3 bits (102), Expect = 1e-13
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC--CCATCTTCTA 225565
||||| | ||||| ||||| |||| ||||| || | || || | |||||||| |
Sbjct 689850 AGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACA--GTACATAGCCATCTTCCA 689907
Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625
|||| |||| | || || |||| ||||||| || || || ||||||||||||||||
Sbjct 689908 GCTGTTTCCTGACAAATATCAGTCTCTGTTGGTGAGGTGGGATGCCTTCCTTGTCTTGGA 689967
Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685
|||| ||| ||| || || |||||| || | || || | ||||| ||| |||
Sbjct 689968 TCTTAGTCTTGACATTCTCAATAGTGTCTCTGGGCTTGACCTCAAGAGTGATGGTCATGC 690027
Query 225686 CCGTCAAAGTTTTTATGAA 225704
|||| ||| || |||||
Sbjct 690028 TTGTCAGAGTCTTCATGAA 690046
>seq70
Length=7483708
Score = 93.3 bits (102), Expect = 1e-13
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || ||||| | ||||| ||||| |||| || ||||| | || || | |||
Sbjct 5585706 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGATC 5585765
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
|| ||||| || ||||| || || || || ||||| || || || ||||||||||
Sbjct 5585766 CTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTC 5585825
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| ||| || |||||||| | || || || | ||||| ||
Sbjct 5585826 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATGGT 5585885
Query 225681 CTTGCCCGTCA 225691
|||||||||||
Sbjct 5585886 CTTGCCCGTCA 5585896
>seq28
Length=9942386
Score = 91.5 bits (100), Expect = 4e-13
Identities = 159/227 (70%), Gaps = 7/227 (3%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || ||||| || ||||| ||||| |||| || || || | || ||
Sbjct 239160 ACGCAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCAGACAGGGT 239219
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||| | |||||||| | || || || || | || || || || | || ||
Sbjct 239220 GCAGCCATCTCC-AGCTGCTTGCTGGCAAATATCAGCCTGTGCTGATCAGGTAGGATGCC 239278
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT--CTGAGGTTTCCACGTCT 225669
||||||||||||| |||| ||| ||| | |||||||| ||||| ||||| ||
Sbjct 239279 TTCCTTGTCTTGGGTCTTGGCCTTGACATTCTTGATGGTGTCACTGAG--CTCCAC--CT 239334
Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| |||||| ||||||| || || | || | ||||| ||
Sbjct 239335 GGAGTGATGGTCTTGTCCGTCAAGGTCTTCACCAAGATCTGCATGTT 239381
>seq366
Length=4409749
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || ||||| | ||| | ||||| |||| ||||| || | || ||
Sbjct 1116212 ACGTAGGCGCAGCACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGT 1116271
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
||||| || |||||||| || || || || || | || ||||| || || || ||
Sbjct 1116272 GTGGCCATCCTCCAGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCC 1116331
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| ||||||||||| ||| ||| || |||||||| || || || || |
Sbjct 1116332 TTCCTTATCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAG 1116391
Query 225672 CGTGATCGTCTT 225683
||||| |||||
Sbjct 1116392 AGTGATGGTCTT 1116403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192058748579174
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