Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq457 152 4e-32
seq25 114 1e-20
seq6307 82.4 6e-11
seq144 82.4 6e-11
>seq457
Length=2943904
Score = 152 bits (168), Expect = 4e-32
Identities = 132/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||| ||||| || | |||||||||||||||||||||
Sbjct 1188168 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGC 1188227
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| ||||||| |||||| |||||||| || ||||| || | |
Sbjct 1188228 ACGCCCAGGCCCATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 1188287
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877
|| || |||||||| | ||||||||| ||||| || ||||| ||
Sbjct 1188288 ACATAGAACTGACAGAGGGCATGGCAGGGAGGCAGTGCCATCAG 1188331
Score = 96.9 bits (106), Expect = 3e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC-GAA 30075
||||| ||||||||||| ||||| || || |||||||| || || | || |||| |||
Sbjct 1194045 AAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTCCCCTTCCTGCC-GTGCAGAGAA 1194103
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| |||||| ||| |||| ||| || ||||| |||||||| | || |||||
Sbjct 1194104 TCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCCTTGGA 1194163
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162
||| || ||||| | |||||||||||
Sbjct 1194164 GGACAGTTCTTTAGCATTTGTGGACCC 1194190
>seq25
Length=8104077
Score = 114 bits (126), Expect = 1e-20
Identities = 210/303 (69%), Gaps = 15/303 (5%)
Strand=Plus/Minus
Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695
|||||||| |||| || | | |||| ||| | || |||||||||| || ||
Sbjct 5743404 AGCTGAATTTTCAGAGGCTGGATATGGTTCGGGTGAATATGTGCATCTCCCAAAGTATGA 5743345
Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29755
||||| || || || | ||| || || ||| || |||| ||| ||| || | | |
Sbjct 5743344 ACAAAATCACCTGGCTTTAGTCCCATGGTGTGGGCAATCACGTAGATGAACAGGGCATGG 5743285
Query 29756 CTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCAC 29815
|||| ||||| |||||||| || || |||| ||| |||||||| || || | | ||
Sbjct 5743284 CTGGTAATGTTGAAGGGCACACCCAGGCCCACGTCTCCTGACCTTTGCTAAAAGGGACAA 5743225
Query 29816 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG-CATGGCACGGAGGAAGGGCCA- 29873
|| |||||||| | |||| | | || |||| ||||||| ||||| || ||||
Sbjct 5743224 GACAGCTCTCCAT---TCACTACATA--GA---ATGGACATGGCAAGGAGGCAGTGCCAG 5743173
Query 29874 --TGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931
|| || | ||||| || ||||||||||||| |||||| | ||||| | |||||
Sbjct 5743172 CATGGGA---AGATCTTTTGGCTTCCAGGCACACAAGATGATTCTTCTGTCATAAGGGTT 5743116
Query 29932 GTT 29934
|||
Sbjct 5743115 GTT 5743113
>seq6307
Length=6747
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| ||||| |||||||| |||| || | ||||| | | ||||| |||||| || ||
Sbjct 2085 TTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 2144
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || || | ||||| ||||||| ||||| ||||||
Sbjct 2145 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 2192
>seq144
Length=4920231
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| ||||| |||||||| |||| || | ||||| | | ||||| |||||| || ||
Sbjct 4541637 TTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 4541578
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || || | ||||| ||||||| ||||| ||||||
Sbjct 4541577 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 4541530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406010137525006
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |