Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq457 152 4e-32 seq25 114 1e-20 seq6307 82.4 6e-11 seq144 82.4 6e-11 >seq457 Length=2943904 Score = 152 bits (168), Expect = 4e-32 Identities = 132/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||||||||| Sbjct 1188168 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGC 1188227 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| ||||||| |||||| |||||||| || ||||| || | | Sbjct 1188228 ACGCCCAGGCCCATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 1188287 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || |||||||| | ||||||||| ||||| || ||||| || Sbjct 1188288 ACATAGAACTGACAGAGGGCATGGCAGGGAGGCAGTGCCATCAG 1188331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC-GAA 30075 ||||| ||||||||||| ||||| || || |||||||| || || | || |||| ||| Sbjct 1194045 AAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTCCCCTTCCTGCC-GTGCAGAGAA 1194103 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||||| ||| |||| ||| || ||||| |||||||| | || ||||| Sbjct 1194104 TCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCCTTGGA 1194163 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||| || ||||| | ||||||||||| Sbjct 1194164 GGACAGTTCTTTAGCATTTGTGGACCC 1194190 >seq25 Length=8104077 Score = 114 bits (126), Expect = 1e-20 Identities = 210/303 (69%), Gaps = 15/303 (5%) Strand=Plus/Minus Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695 |||||||| |||| || | | |||| ||| | || |||||||||| || || Sbjct 5743404 AGCTGAATTTTCAGAGGCTGGATATGGTTCGGGTGAATATGTGCATCTCCCAAAGTATGA 5743345 Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29755 ||||| || || || | ||| || || ||| || |||| ||| ||| || | | | Sbjct 5743344 ACAAAATCACCTGGCTTTAGTCCCATGGTGTGGGCAATCACGTAGATGAACAGGGCATGG 5743285 Query 29756 CTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCAC 29815 |||| ||||| |||||||| || || |||| ||| |||||||| || || | | || Sbjct 5743284 CTGGTAATGTTGAAGGGCACACCCAGGCCCACGTCTCCTGACCTTTGCTAAAAGGGACAA 5743225 Query 29816 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG-CATGGCACGGAGGAAGGGCCA- 29873 || |||||||| | |||| | | || |||| ||||||| ||||| || |||| Sbjct 5743224 GACAGCTCTCCAT---TCACTACATA--GA---ATGGACATGGCAAGGAGGCAGTGCCAG 5743173 Query 29874 --TGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931 || || | ||||| || ||||||||||||| |||||| | ||||| | ||||| Sbjct 5743172 CATGGGA---AGATCTTTTGGCTTCCAGGCACACAAGATGATTCTTCTGTCATAAGGGTT 5743116 Query 29932 GTT 29934 ||| Sbjct 5743115 GTT 5743113 >seq6307 Length=6747 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| |||||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 2085 TTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 2144 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || | ||||| ||||||| ||||| |||||| Sbjct 2145 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 2192 >seq144 Length=4920231 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| |||||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 4541637 TTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 4541578 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || | ||||| ||||||| ||||| |||||| Sbjct 4541577 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 4541530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406010137525006