Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1345 224 8e-54 seq498 196 4e-45 seq184 116 3e-21 seq78 89.7 4e-13 >seq1345 Length=786133 Score = 224 bits (248), Expect = 8e-54 Identities = 578/877 (66%), Gaps = 40/877 (5%) Strand=Plus/Minus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 |||||| ||| ||| |||| || ||||| || || || | ||||| ||||||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA 4378 ||| || ||||| | ||| | | ||| || || | | || || | | | || Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 | ||| | |||||||| || ||||| |||| || | || ||| || || || | | Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | ||||| || ||||| | | ||| | | ||||| | Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 ||| | | | | |||| || | ||| | || |||| | || ||||| || Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTC 220906 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 |||||| || || || |||||||| || || || || ||||| || | |||||||| | Sbjct 220905 ACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAAG 220846 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 || | ||| || ||||| ||||| | ||||| || ||||||||||| |||||||| || Sbjct 220845 TCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCAC 220786 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAA 4738 ||||||||| || || ||| | || | | || || ||| Sbjct 220785 GGCGGCAAAGGCCAC-------------AAC--ACATTCTCCATATGTAGCCCCTTT--G 220743 Query 4739 TGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACT 4798 | |||||| || |||||| || || | | ||||| || || | |||| Sbjct 220742 TCCCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAA-GAGATACT 220695 Query 4799 -TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTA 4857 | || | |||| ||| ||||| || || || || |||||||||||||||| Sbjct 220694 CCCTCTCCTTGGAATCTTTAAT----GTGTCAATAAGGAGACTGTACATTTCAGAATGTA 220639 Query 4858 TATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGT 4917 |||||||||| |||| || || || || || || | | ||||| ||||||||||| | Sbjct 220638 TATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTT 220579 Query 4918 TACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCA 4977 | ||| || || ||||| || || ||||| | |||||| |||||||| || ||| Sbjct 220578 GGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCC 220519 Query 4978 AAACATGAGATATAAAGTACTGTTCGTCA---GGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 |||||||| ||||| ||| ||| || || || || ||||| | | || Sbjct 220518 GAACATGAGGTATAA---CATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATAT 220462 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 | || | | || || || ||| | |||||||| || || || |||| |||||||| Sbjct 220461 CCTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCT 220402 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| |||||| | || | || |||| |||||||| Sbjct 220401 GCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 196 bits (216), Expect = 4e-45 Identities = 487/736 (66%), Gaps = 35/736 (5%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| ||| | ||||||| || ||||| | || || ||||||| |||||||||||| Sbjct 2186372 TGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAATATTTTCC 2186430 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT 4379 || || | ||| ||||| | | ||| || ||| || Sbjct 2186431 ATGAAGTGAAATGGATTCTCTACTTTGAAAA-----TCAGCCT----------------- 2186468 Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 ||| || ||||| || || ||||| |||| || |||||| || || || | || Sbjct 2186469 --GTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAGCTTC 2186526 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 ||||| | || | || | |||| || ||||| | || || | ||||| ||| Sbjct 2186527 ACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAATTATTTCT 2186586 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 |||| | | | ||||| || | ||| | || |||| | || ||||| ||| Sbjct 2186587 TTTACCCTCTGCTCCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCA 2186646 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 || || || || ||||||||||| || || || || ||||| || | |||||||| | Sbjct 2186647 CAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGT 2186706 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 || ||| || ||||| ||||| | | || || || ||||| |||||||| ||| Sbjct 2186707 CCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATGCCTTCCACG 2186763 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAA 4738 |||||||| || || | || | | | | ||| ||||||| |||||| || Sbjct 2186764 GCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCT-CTTTGTCCCAAATCCAACGCAA 2186822 Query 4739 TGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACT 4798 ||||||| || || ||||| || | || || || | |||||| | || | | ||| Sbjct 2186823 GGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGAT-ACT 2186881 Query 4799 TTTT-TCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTA 4857 | || | |||| ||| || ||||| || || || || |||||||||||||||| Sbjct 2186882 CCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGAATGTA 2186941 Query 4858 TATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGT 4917 | ||||| || ||||| || || || || || || | || ||||| ||||||||||| | Sbjct 2186942 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCTT 2187001 Query 4918 TACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCA 4977 | ||||| | | ||||| || || ||||| | |||||| ||||| || || || Sbjct 2187002 GGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAGCAC 2187058 Query 4978 AAACATGAGATATAAA 4993 ||| |||| |||||| Sbjct 2187059 GAACGTGAGGTATAAA 2187074 >seq184 Length=3314118 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || || ||||| || || || || ||||| || | ||||||||| | |||||||| || Sbjct 1994078 TCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1994137 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| |||||||| |||||||||||||| ||||| |||||||| |||||||| || || Sbjct 1994138 AGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGGCC 1994197 Query 4692 AC 4693 || Sbjct 1994198 AC 1994199 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 1986944 ATAAAATCAAAGGGATT 1986960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| || || || || ||||||||||||||||| || || | Sbjct 2000944 AAAATCTT---ACCAAGTTTTCATTGACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 2001000 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | || || || || |||| || || | ||||| || |||||||| || | || || | Sbjct 2001001 CGTGGGAGATGAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGGTCCTTTG 2001060 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 2001061 ATAAGTCAAC 2001070 >seq78 Length=6419775 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| || || || || ||||| || | |||||||| | || | ||| || Sbjct 5585563 TCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCTTG 5585622 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | || || || ||||| ||||| |||||||| |||||||| || || Sbjct 5585623 AGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGGCC 5585682 Query 4692 AC 4693 || Sbjct 5585683 AC 5585684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||| || ||||| || || || || ||||||||||||||||| ||||| || Sbjct 5587039 GGATCTTTAATGTAGGTGTCAATCAGGAGACTGTACATTTCAGAATGTATGTTTTCCATG 5587098 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | || || || ||||||||||| | | ||||| Sbjct 5587099 GCAATTTGGAAGCCATAGAAACAGCGGGCCTCCGTGACTTGAACTTCCTGGCTAAATC 5587156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426888666491693