Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq457 136 3e-27
>seq457
Length=2943904
Score = 136 bits (150), Expect = 3e-27
Identities = 129/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||||||||
Sbjct 1188168 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGC 1188227
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| || |||| |||||| ||||| || || ||||| ||||
Sbjct 1188228 ACGCCCAGGCCCATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 1188287
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372
|| || |||||||| | ||| ||||| ||||| || ||||| |||
Sbjct 1188288 ACATAGAACTGACAGAGGGCATGGCAGGGAGGCAGTGCCATCAGG 1188332
Score = 113 bits (124), Expect = 3e-20
Identities = 128/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
|||||| |||| |||||||| ||||| ||||| ||||| ||||| || || ||||||||
Sbjct 1194023 CATGTCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTC 1194082
Query 27549 TCCCTCTTCCCTGTGCTC-GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607
|| || | || |||| ||| ||| |||||| ||| |||| ||| || ||||| |
Sbjct 1194083 CCCTTCCTGCC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 1194141
Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
||||||| | || ||||| ||| || ||||| | |||||||||||
Sbjct 1194142 CCCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGACCC 1194190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369367951327151
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |