Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq457 136 3e-27 >seq457 Length=2943904 Score = 136 bits (150), Expect = 3e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | |||||||||||||||||||| Sbjct 1188168 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGC 1188227 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || |||| |||||| ||||| || || ||||| |||| Sbjct 1188228 ACGCCCAGGCCCATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 1188287 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || |||||||| | ||| ||||| ||||| || ||||| ||| Sbjct 1188288 ACATAGAACTGACAGAGGGCATGGCAGGGAGGCAGTGCCATCAGG 1188332 Score = 113 bits (124), Expect = 3e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||| |||||||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 1194023 CATGTCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTC 1194082 Query 27549 TCCCTCTTCCCTGTGCTC-GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 || || | || |||| ||| ||| |||||| ||| |||| ||| || ||||| | Sbjct 1194083 CCCTTCCTGCC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 1194141 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||| | || ||||| ||| || ||||| | ||||||||||| Sbjct 1194142 CCCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGACCC 1194190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369367951327151