Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 300 2e-76
seq498 279 7e-70
seq657 118 1e-21
seq78 89.7 7e-13
seq184 86.0 9e-12
>seq1345
Length=786133
Score = 300 bits (332), Expect = 2e-76
Identities = 590/872 (68%), Gaps = 33/872 (4%)
Strand=Plus/Minus
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
||| || || ||||| | ||||| || || || || || | ||| | ||| ||||||||
Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146
Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971
||| || ||||||| ||| || | || |||| || ||||| || | || |||||
Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086
Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031
|| || | || ||||| || || ||||||| | | ||||| || ||||| ||
Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026
Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091
|| || | |||||||| || ||||| || || || | | |||| || |||||
Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966
Query 48092 TGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149
|||| | | ||| ||| || ||| || || || ||||| | || |||||
Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTGTGTAC--CAGGTGCTTGAACATCAGGCAGGCAAAG 220908
Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209
|||||||| | || |||||||| || || | || || |||||||| || ||||||||
Sbjct 220907 TCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATA 220848
Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269
||||| || || || ||||| ||||||| || ||||| ||||||||||| ||||||||
Sbjct 220847 AGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCC 220788
Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGTTGT 48329
||||| ||||| || || | ||||| || |||| || || ||||
Sbjct 220787 ACGGCGGCAAAGGCCACAACACATTCTCCATA-------------TGTAGCC-CCTTTGT 220742
Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389
|||| | || || |||||||| |||| |||||||| |||||| | |
Sbjct 220741 CCCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCC 220693
Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449
| || ||| ||||||| | || || || | ||||| |||||||| || || |||
Sbjct 220692 CTCTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATA 220637
Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509
||||| || | || || || || || ||||| | | ||||||| || || ||
Sbjct 220636 TTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGG 220577
Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569
| ||| ||| |||| |||||||| ||||| | ||||| || ||||| || ||
Sbjct 220576 CTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGA 220517
Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTT 48629
||||| |||| || | | || ||| |||| | ||||| | ||||| ||
Sbjct 220516 ACATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATCCTTG 220457
Query 48630 GATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCAT 48689
|| | || || || ||||| |||||||| || ||||| |||| || ||||| | |||
Sbjct 220456 GAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAG 220397
Query 48690 ATATCACTGTATTGGATTGGGAAAATAACAAA 48721
|||||| ||||| ||| || || || |||||
Sbjct 220396 ATATCATGGTATTTGATGGGAAAGATGACAAA 220365
>seq498
Length=2542268
Score = 279 bits (308), Expect = 7e-70
Identities = 620/928 (67%), Gaps = 62/928 (7%)
Strand=Plus/Plus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 47850
||| || ||| |||| || | ||||| ||| ||| |||| ||||| || |||||
Sbjct 2186312 TTAGAAATCAGCATCCAAGGTAAAATAATTCTCTG-TTGAACTCGACATCAC-CCCATCC 2186369
Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910
| || || || || | || ||||| || || | || || ||||| | ||| |||||||
Sbjct 2186370 TCTGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAATATTTT 2186428
Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCA 47970
|||| || | ||||||||| || | ||| || |||||
Sbjct 2186429 CCATGAAGTGAAATGGATTCTCTAC------------TTTGAA------------AATCA 2186464
Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030
| || ||||| || || || || || ||||||| || ||||| || || || |
Sbjct 2186465 GCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAGCT 2186524
Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG 48090
| || || | ||||||||||| |||| || || || | || || | || |||||
Sbjct 2186525 TCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAATTATTT 2186584
Query 48091 ATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAA 48148
| ||||| | | ||| ||| || ||| || || || ||||| | || |||||
Sbjct 2186585 CTTTTACCCTCTGCTCCGATGGCTTGTGTAC--CAGGTGCTTGAACATCAGGCAGGCAAA 2186642
Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208
||||| || | || || ||||| || || | || || |||||||| || ||||||||
Sbjct 2186643 GTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCAT 2186702
Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268
||||| | || |||||||| ||||||| | |||||| || ||||| ||||||||
Sbjct 2186703 CAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATGCCTTC 2186759
Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCG 48325
||||| ||||| ||| || | |||| ||| | || || |||| ||||| ||
Sbjct 2186760 CACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAACG 2186819
Query 48326 TTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385
||||| || ||||||||||| ||| ||||||| |||||||||||| | |||||| |
Sbjct 2186820 CAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGATA 2186879
Query 48386 GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445
| | || || |||||||| ||| || || || | ||||| |||||||| || ||
Sbjct 2186880 CTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGAATG 2186939
Query 48446 AATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
|| ||||| || || || || || || || ||||| | || ||||||| || || ||
Sbjct 2186940 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTC 2186999
Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565
| |||||| | |||| |||||||| ||||| | ||||| || || || || ||
Sbjct 2187000 TTGGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAGC 2187056
Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625
|| || ||||||| | | || ||| |||| ||||| | ||||||
Sbjct 2187057 ACGAACGTGAGGTATAAAATGTCTCTC-CTGGGTTTCAGAGCTCCCCAGTGCTGGATATC 2187115
Query 48626 TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATT 48685
||| || | || ||||| || ||||| ||||| || ||||| |
Sbjct 2187116 TTTGGAAA----------------GGTTCAAAAGGAGGCCTCCGCTTTCTTGTACATGTG 2187159
Query 48686 CCATATATCACTGTATTGGATTGGGAAA 48713
||| |||||| ||||| || |||||||
Sbjct 2187160 CCAGATATCATGGTATTTGA-TGGGAAA 2187186
>seq657
Length=1571634
Score = 118 bits (130), Expect = 1e-21
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| || || |||||||| || ||||||||||| ||||| | ||
Sbjct 954653 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 954594
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || |||| ||| |||||||| || ||||| ||||| || || | | ||||||
Sbjct 954593 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 954534
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 954533 TTTCTTACACCAT 954521
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| |||||||| ||||| || || |||||| ||| |||| || || ||||| || |
Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
| | ||||| ||||||||||||||||| ||||| || || ||||| || | || ||||
Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| |||| |||||||| | || || | | ||| || | ||||| ||||
Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||
Sbjct 940721 AGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTT 940662
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517
||| |||||||| || | || || ||| || ||||| || || | ||| | ||||||
Sbjct 940661 GTAGGTTTCAATTGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAA 940602
Query 78518 CATATGCTGAGGTCTTTCAACC 78539
|||||| || ||||||||| ||
Sbjct 940601 CATATGTTGTGGTCTTTCAGCC 940580
Score = 107 bits (118), Expect = 3e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 77355 GATCCATTATATGTTTCATAAGGTCC-TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413
|| || | ||| ||||||||||| || | || || ||||| ||||| || ||||||||
Sbjct 951260 GAGCCCTCATACGTTTCATAAGGGCCATACTCCTT-TGCTAGGTCACAGCTGGCTTCCAA 951202
Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473
||||| |||||||| ||||| || |||| |||||| | || ||||| || ||
Sbjct 951201 AGCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCTTCTGGGCTCTC 951142
Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533
||| || || | || || || |||||||||| || || |||||||| ||||| ||
Sbjct 951141 AAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACTCCAATTCCAATGGG 951082
Query 77534 TCTATGTCTCTTATTGGA 77551
| ||| | ||||||||
Sbjct 951081 CCGATGGCGTTTATTGGA 951064
Score = 89.7 bits (98), Expect = 7e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||| ||||| |||||||| || ||||| || |||| || ||||| |||| || ||
Sbjct 947911 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGC 947852
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| || ||||||||||| || | || || ||||| | || || | ||||| ||
Sbjct 947851 TCTTCCTTCCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 947792
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| || || || || | ||||||| ||
Sbjct 947791 TCCAGGTAAATAGCAAATGCTCCAGGGCG 947763
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
|||||||| ||||||||||| ||||||| ||||| || |||||||| ||||||||||||
Sbjct 948263 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 948204
Query 77985 CAGTC 77989
|||||
Sbjct 948203 CAGTC 948199
>seq78
Length=6419775
Score = 89.7 bits (98), Expect = 7e-13
Identities = 104/139 (75%), Gaps = 5/139 (4%)
Strand=Plus/Plus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 47850
||| || ||| |||| || | |||| ||| ||| |||| ||||| || |||||
Sbjct 5583567 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCCCCATCC 5583625
Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910
| || ||||| ||||| || ||||| || || || || || ||||| | ||| |||||||
Sbjct 5583626 TCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 5583685
Query 47911 CCATAAAATCAAATGGATT 47929
|||| || |||||||||||
Sbjct 5583686 CCATGAAGTCAAATGGATT 5583704
>seq184
Length=3314118
Score = 86.0 bits (94), Expect = 9e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 47853 TGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 47912
||||| ||| || |||||||| || ||||| ||||| ||||| ||||| || ||||||
Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943
Query 47913 ATAAAATCAAATGGATTAACTGCATTATAAAt 47944
||||||||||| ||||| |||| | | ||||
Sbjct 1986944 ATAAAATCAAAGGGATTTTCTGCCTGAAAAAT 1986975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694400301825440
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