Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1345 300 2e-76 seq498 279 7e-70 seq657 118 1e-21 seq78 89.7 7e-13 seq184 86.0 9e-12 >seq1345 Length=786133 Score = 300 bits (332), Expect = 2e-76 Identities = 590/872 (68%), Gaps = 33/872 (4%) Strand=Plus/Minus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||| || || ||||| | ||||| || || || || || | ||| | ||| |||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971 ||| || ||||||| ||| || | || |||| || ||||| || | || ||||| Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 || || | || ||||| || || ||||||| | | ||||| || ||||| || Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 || || | |||||||| || ||||| || || || | | |||| || ||||| Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966 Query 48092 TGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 |||| | | ||| ||| || ||| || || || ||||| | || ||||| Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTGTGTAC--CAGGTGCTTGAACATCAGGCAGGCAAAG 220908 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 |||||||| | || |||||||| || || | || || |||||||| || |||||||| Sbjct 220907 TCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATA 220848 Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269 ||||| || || || ||||| ||||||| || ||||| ||||||||||| |||||||| Sbjct 220847 AGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCC 220788 Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGTTGT 48329 ||||| ||||| || || | ||||| || |||| || || |||| Sbjct 220787 ACGGCGGCAAAGGCCACAACACATTCTCCATA-------------TGTAGCC-CCTTTGT 220742 Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 |||| | || || |||||||| |||| |||||||| |||||| | | Sbjct 220741 CCCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCC 220693 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 | || ||| ||||||| | || || || | ||||| |||||||| || || ||| Sbjct 220692 CTCTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATA 220637 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 ||||| || | || || || || || ||||| | | ||||||| || || || Sbjct 220636 TTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGG 220577 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 | ||| ||| |||| |||||||| ||||| | ||||| || ||||| || || Sbjct 220576 CTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGA 220517 Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTT 48629 ||||| |||| || | | || ||| |||| | ||||| | ||||| || Sbjct 220516 ACATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATCCTTG 220457 Query 48630 GATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCAT 48689 || | || || || ||||| |||||||| || ||||| |||| || ||||| | ||| Sbjct 220456 GAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAG 220397 Query 48690 ATATCACTGTATTGGATTGGGAAAATAACAAA 48721 |||||| ||||| ||| || || || ||||| Sbjct 220396 ATATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 279 bits (308), Expect = 7e-70 Identities = 620/928 (67%), Gaps = 62/928 (7%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 47850 ||| || ||| |||| || | ||||| ||| ||| |||| ||||| || ||||| Sbjct 2186312 TTAGAAATCAGCATCCAAGGTAAAATAATTCTCTG-TTGAACTCGACATCAC-CCCATCC 2186369 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | || || || || | || ||||| || || | || || ||||| | ||| ||||||| Sbjct 2186370 TCTGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAATATTTT 2186428 Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCA 47970 |||| || | ||||||||| || | ||| || ||||| Sbjct 2186429 CCATGAAGTGAAATGGATTCTCTAC------------TTTGAA------------AATCA 2186464 Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030 | || ||||| || || || || || ||||||| || ||||| || || || | Sbjct 2186465 GCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAGCT 2186524 Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG 48090 | || || | ||||||||||| |||| || || || | || || | || ||||| Sbjct 2186525 TCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAATTATTT 2186584 Query 48091 ATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAA 48148 | ||||| | | ||| ||| || ||| || || || ||||| | || ||||| Sbjct 2186585 CTTTTACCCTCTGCTCCGATGGCTTGTGTAC--CAGGTGCTTGAACATCAGGCAGGCAAA 2186642 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 ||||| || | || || ||||| || || | || || |||||||| || |||||||| Sbjct 2186643 GTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCAT 2186702 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 ||||| | || |||||||| ||||||| | |||||| || ||||| |||||||| Sbjct 2186703 CAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATGCCTTC 2186759 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCG 48325 ||||| ||||| ||| || | |||| ||| | || || |||| ||||| || Sbjct 2186760 CACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAACG 2186819 Query 48326 TTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||||| || ||||||||||| ||| ||||||| |||||||||||| | |||||| | Sbjct 2186820 CAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGATA 2186879 Query 48386 GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445 | | || || |||||||| ||| || || || | ||||| |||||||| || || Sbjct 2186880 CTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGAATG 2186939 Query 48446 AATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 || ||||| || || || || || || || ||||| | || ||||||| || || || Sbjct 2186940 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTC 2186999 Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | |||||| | |||| |||||||| ||||| | ||||| || || || || || Sbjct 2187000 TTGGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAGC 2187056 Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 || || ||||||| | | || ||| |||| ||||| | |||||| Sbjct 2187057 ACGAACGTGAGGTATAAAATGTCTCTC-CTGGGTTTCAGAGCTCCCCAGTGCTGGATATC 2187115 Query 48626 TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATT 48685 ||| || | || ||||| || ||||| ||||| || ||||| | Sbjct 2187116 TTTGGAAA----------------GGTTCAAAAGGAGGCCTCCGCTTTCTTGTACATGTG 2187159 Query 48686 CCATATATCACTGTATTGGATTGGGAAA 48713 ||| |||||| ||||| || ||||||| Sbjct 2187160 CCAGATATCATGGTATTTGA-TGGGAAA 2187186 >seq657 Length=1571634 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| || || |||||||| || ||||||||||| ||||| | || Sbjct 954653 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 954594 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| || ||||| ||||| || || | | |||||| Sbjct 954593 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 954534 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 954533 TTTCTTACACCAT 954521 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| ||| |||| || || ||||| || | Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | || || | | ||| || | ||||| |||| Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || ||||| ||||| |||||||| || |||||||| || || Sbjct 940721 AGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTT 940662 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||| |||||||| || | || || ||| || ||||| || || | ||| | |||||| Sbjct 940661 GTAGGTTTCAATTGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAA 940602 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 |||||| || ||||||||| || Sbjct 940601 CATATGTTGTGGTCTTTCAGCC 940580 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCC-TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | ||| ||||||||||| || | || || ||||| ||||| || |||||||| Sbjct 951260 GAGCCCTCATACGTTTCATAAGGGCCATACTCCTT-TGCTAGGTCACAGCTGGCTTCCAA 951202 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 ||||| |||||||| ||||| || |||| |||||| | || ||||| || || Sbjct 951201 AGCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCTTCTGGGCTCTC 951142 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| || || | || || || |||||||||| || || |||||||| ||||| || Sbjct 951141 AAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACTCCAATTCCAATGGG 951082 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | |||||||| Sbjct 951081 CCGATGGCGTTTATTGGA 951064 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| |||||||| || ||||| || |||| || ||||| |||| || || Sbjct 947911 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGC 947852 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| || ||||||||||| || | || || ||||| | || || | ||||| || Sbjct 947851 TCTTCCTTCCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 947792 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | ||||||| || Sbjct 947791 TCCAGGTAAATAGCAAATGCTCCAGGGCG 947763 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| || |||||||| |||||||||||| Sbjct 948263 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 948204 Query 77985 CAGTC 77989 ||||| Sbjct 948203 CAGTC 948199 >seq78 Length=6419775 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/139 (75%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 47850 ||| || ||| |||| || | |||| ||| ||| |||| ||||| || ||||| Sbjct 5583567 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCCCCATCC 5583625 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | || ||||| ||||| || ||||| || || || || || ||||| | ||| ||||||| Sbjct 5583626 TCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 5583685 Query 47911 CCATAAAATCAAATGGATT 47929 |||| || ||||||||||| Sbjct 5583686 CCATGAAGTCAAATGGATT 5583704 >seq184 Length=3314118 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 47853 TGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 47912 ||||| ||| || |||||||| || ||||| ||||| ||||| ||||| || |||||| Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943 Query 47913 ATAAAATCAAATGGATTAACTGCATTATAAAt 47944 ||||||||||| ||||| |||| | | |||| Sbjct 1986944 ATAAAATCAAAGGGATTTTCTGCCTGAAAAAT 1986975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694400301825440