Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1345 279 7e-70 seq498 260 2e-64 seq657 123 4e-23 >seq1345 Length=786133 Score = 279 bits (308), Expect = 7e-70 Identities = 583/870 (67%), Gaps = 29/870 (3%) Strand=Plus/Minus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 |||||| || || || | ||||| || || || || || | ||| | ||| |||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 46401 CATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAG 46460 ||| || ||||| | ||| || || |||| || ||||| || | || ||||| Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520 || || | || ||||| || ||| ||||||| | | ||||| || || || || Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGA 46580 || || | |||||||| || ||||| || || || | | |||| | ||||| Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966 Query 46581 TGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATC 46640 ||||| | | ||| ||| || | || || || ||||| | || ||||| || Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTC 220906 Query 46641 ACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAG 46700 |||||| | ||| |||||||| || || | || || |||||||| || || ||||| || Sbjct 220905 ACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAAG 220846 Query 46701 TCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 46760 ||| ||||| || ||||| ||||| | || ||||| ||||||||||| |||||||| || Sbjct 220845 TCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCAC 220786 Query 46761 AGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTTGAGC 46820 || || || || |||| | ||||| |||| | || |||||| | Sbjct 220785 GGCGGCAAAGGCCACAACACATTCTCC-------------ATATGTAGCC-CCTTTGTCC 220740 Query 46821 CCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 46880 ||| | || || |||||||| |||| |||||||| |||||| | | | Sbjct 220739 CCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCCT 220691 Query 46881 ttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940 || | ||||||| |||| || || | ||||| |||||||| ||||| || || Sbjct 220690 CTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATATT 220635 Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACA 47000 ||| || | || || || || || ||||| | | || || | || || ||| | Sbjct 220634 TTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGCT 220575 Query 47001 AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATAC 47060 ||| ||| ||| |||||||| ||||| | ||||| || ||||| || ||| || Sbjct 220574 GAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAAC 220515 Query 47061 ATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGA 47120 ||| |||| || | | ||| || |||| | ||||| | ||||| || || Sbjct 220514 ATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATCCTTGGA 220455 Query 47121 TATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 | || || || ||||| ||||| || || ||||| |||| || ||||| | ||| || Sbjct 220454 AAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGAT 220395 Query 47181 ATCACGATATTGGATCGGAAAAATAACAAA 47210 |||| | |||| ||| ||||| || ||||| Sbjct 220394 ATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 260 bits (288), Expect = 2e-64 Identities = 614/928 (66%), Gaps = 57/928 (6%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTGT----GACATAACTCCCATTT 46339 ||| || || |||| || | ||||| ||| ||| ||| ||||| || ||||| Sbjct 2186312 TTAGAAATCAGCATCCAAGGTAAAATAATTCTCTG-TTGAACTCGACATCAC-CCCATCC 2186369 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | ||||| || ||| | || ||||| || || | || || ||||| | ||| ||||||| Sbjct 2186370 TCTGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAATATTTT 2186428 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 |||| || | ||| ||||| || ||| || ||||| Sbjct 2186429 CCATGAAGTGAAATGGATTCTCTAC------------TTTGAA------------AATCA 2186464 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519 | || ||||| || || || || ||| ||||||| || ||||| || ||||| | Sbjct 2186465 GCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAGCT 2186524 Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCG 46579 | || || | ||||||||||| |||| || || || | || || | ||||| Sbjct 2186525 TCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAATTATTT 2186584 Query 46580 ATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAAT 46639 | |||| | | ||| ||| || | || || || ||||| | || ||||| | Sbjct 2186585 CTTTTACCCTCTGCTCCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 2186644 Query 46640 CACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTA 46699 |||| || | ||| || ||||| || || | || || |||||||| || || ||||| | Sbjct 2186645 CACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCA 2186704 Query 46700 GTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTA 46759 |||| |||| |||||||| ||||| | | |||||| || ||||| |||||||| | Sbjct 2186705 GTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATGCCTTCCA 2186761 Query 46760 CAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTT 46816 | || || || ||||||| | |||| ||| | || || || | |||||| | Sbjct 2186762 CGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAACGCA 2186821 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 46876 ||||| || ||||| ||||| ||| ||||||| |||||||||||| | |||||| | | Sbjct 2186822 AGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGATACT 2186881 Query 46877 ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 | || | | |||||||| || || || || | ||||| |||||||| ||||| | Sbjct 2186882 CCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGAATGTA 2186941 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 ||||||| || || || || || || || ||||| | || || || | || || ||| Sbjct 2186942 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCTT 2187001 Query 46997 TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 | |||||| || ||| |||||||| ||||| | ||||| || || || || || Sbjct 2187002 GGCTAAATCGCTC---CAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAGCAC 2187058 Query 47057 ATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTT 47116 || || ||||||| | | || | ||| |||| ||||| | |||||||| Sbjct 2187059 GAACGTGAGGTATAAAATGTCTCTCCTGGGT-TTCAGAGCTCCCCAGTGCTGGATATCTT 2187117 Query 47117 TTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCC 47176 | || | || || || || ||||| ||||| || ||||| | || Sbjct 2187118 TGGAAA----------------GGTTCAAAAGGAGGCCTCCGCTTTCTTGTACATGTGCC 2187161 Query 47177 ATATATCACGATATTGGATCGGAAAAAT 47204 | |||||| | |||| ||| ||||| || Sbjct 2187162 AGATATCATGGTATTTGATGGGAAACAT 2187189 >seq657 Length=1571634 Score = 123 bits (136), Expect = 4e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| || || |||||||| || ||||||||||| ||||| | || Sbjct 954653 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 954594 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 954593 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 954534 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 954533 TTTCTTACACCAT 954521 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| ||| | || || || ||||| || | Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | || || | | ||| || | ||||| |||| Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559 Score = 109 bits (120), Expect = 8e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| || | |||||||| |||||||| ||||| || |||||||| || || Sbjct 940721 AGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTT 940662 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||| |||||||| | || || |||||| || ||||| || |||| || | |||||| Sbjct 940661 GTAGGTTTCAATTGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAA 940602 Query 77113 CATATGCTGAGGTCGTTC 77130 |||||| || |||| ||| Sbjct 940601 CATATGTTGTGGTCTTTC 940584 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| |||| || | || | ||||| || || || || || || Sbjct 951260 GAGCCCTCATACGTTTCATAAGGGCCATACTCCTTTGCTAGGTCACAGCTGGCTTCCAAA 951201 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068 || || |||||||| ||||| || |||| |||||| || | || | ||||| | || || Sbjct 951200 GCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGG-GCTTCTGGGCTCTC 951142 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||| || || | || || || ||||||||||| || || |||||||| ||||| || Sbjct 951141 AAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACTCCAATTCCAATGGG 951082 Query 76129 TCTATGTCTCTTATTGGA 76146 | ||| | |||||||| Sbjct 951081 CCGATGGCGTTTATTGGA 951064 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || |||| || Sbjct 935525 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGATG 935466 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||| | ||||| |||| || ||| | ||||| || | |||||| | | Sbjct 935465 GCATAGTCAGGATGCTTCGTAGTCAAGGTTGCCGCTGTCTCTGCAGCCAGAGTATCCAGT 935406 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || | || || ||||| || |||||||||| Sbjct 935405 TCCACTGTGGTGACCCCACTGTACAGGCCTTGGATTACTTTCATGG 935360 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||||||| Sbjct 948263 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 948204 Query 76580 CACTC 76584 || || Sbjct 948203 CAGTC 948199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712658841942720