Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq457 96.9 1e-15 >seq457 Length=2943904 Score = 96.9 bits (106), Expect = 1e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| || ||||||||||| | || | || |||||||| | |||| || |||| || Sbjct 1188328 ATGGCACTGCCTCCCTGCCATGCCCTCTGTCAGTTCTATGT-GGTGAATGGGGAGCTGTC 1188270 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | || |||||||| | |||||| | ||||||| || |||||||| ||||| Sbjct 1188269 TTGCCAGCTTTACCAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTTAACATCGCCAG 1188210 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||| || |||| || | ||||||| Sbjct 1188209 CTATGCCCTGCTCACCTACATGATTGC 1188183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190026199243810