Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq309 127 5e-24 seq423 123 6e-23 seq6 120 7e-22 seq154 109 1e-18 seq120 102 2e-16 seq3 102 2e-16 seq38 100 7e-16 seq31 87.8 4e-12 seq319 84.2 5e-11 >seq309 Length=1536079 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| || ||||| ||||| || ||||| || | ||||| | Sbjct 714824 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGG 714765 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| ||||||||||| || | | || |||||| Sbjct 714764 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCC 714705 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| |||| || || || || || || Sbjct 714704 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTG 714645 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| |||||||| ||||||||||| | |||||| Sbjct 714644 ATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct 713458 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC----AAAGTACGA 713403 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| ||||| ||||| || | | || |||||| Sbjct 713402 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCC 713343 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || | | | |||| |||| || || || || || || Sbjct 713342 TTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTG 713283 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| |||||||| ||||||||||| | |||||| Sbjct 713282 ATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq423 Length=2413410 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| || ||||| ||||| || ||||| || | ||||| | Sbjct 7504 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGG 7445 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || | |||||| |||||||||| || | | ||||||||| Sbjct 7444 CCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCC 7385 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || | || || || || ||| | |||| | ||||||| || | ||||| || Sbjct 7384 TTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTG 7325 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || || ||||||||||||| |||||| || Sbjct 7324 ATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTGCATCTT 7284 >seq6 Length=12818899 Score = 120 bits (132), Expect = 7e-22 Identities = 163/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || ||||| |||||||| ||||||||||| || | | || Sbjct 2580497 CCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 2580438 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 2580437 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACC 2580378 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 || || || || || ||| |||||| |||| | | |||| ||| ||| || || Sbjct 2580377 CTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTC 2580321 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || | || |||||||||| ||||||| Sbjct 2580320 TAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275 >seq154 Length=6791889 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| || ||||| | ||| || |||| || | ||||| | Sbjct 1707856 AGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGG 1707797 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||| | ||||||||||| || | | ||||||| | Sbjct 1707796 CCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGC 1707737 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| |||| || || || || || | Sbjct 1707736 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATG 1707677 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| |||||||| ||||||||||| | |||||| Sbjct 1707676 ATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 >seq120 Length=4857412 Score = 102 bits (112), Expect = 2e-16 Identities = 150/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 151896 ACAAGATG-AAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 || ||||| |||| | |||||||| ||||||||||| || | | ||| | ||||| || Sbjct 3874450 ACCAGATGCAAGA-TGGACTCTTTCTGGATGTTGTAGTCCGACAGAGTGCCGCCATCCTC 3874392 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || || || || | |||||||||||||| | ||| |||||||| ||||| Sbjct 3874391 CAGCTGCTTGCCAGCAAATGTCAGCCTCTGCTGGTCAGGTAGGATGCCTTCCTTGTCTTG 3874332 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || |||||| ||| | | |||| ||| || || |||||||| || || Sbjct 3874331 GATCTTAGCCTTGACATTCTTGATGGTGTCACTGAGCTAG--ACCTCAAGAGTGATGGTC 3874274 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCT 152100 |||||| | || ||||||||||||| || Sbjct 3874273 TTGCCCCTCAGGGTCTTCACGAAGATCT 3874246 >seq3 Length=5748141 Score = 102 bits (112), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || |||||||| ||||||||||| || | | || | ||||| Sbjct 3927311 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCA 3927370 Query 151953 TCTAGGCTTTTCCCGGCGAAG-ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 | || || | ||| || || |||||||||||||| | | ||| |||||||| || Sbjct 3927371 CCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATC 3927430 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| |||| | | |||| | ||| || || ||||| || | Sbjct 3927431 TTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGATGTT 3927490 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| |||| |||||| || Sbjct 3927491 CTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTT 3927526 >seq38 Length=12148825 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| || ||||| | ||| || |||| || | ||||| | |||||||| Sbjct 10461016 ACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGTCCATCTTCC 10461075 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || |||||| | ||||||||||| || | | ||||||||||| || || Sbjct 10461076 AGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 10461135 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || | || ||| | |||| |||| ||| || || || || || || ||||| Sbjct 10461136 ATCTGGGCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGCGTGATGGTTTTC 10461195 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 ||| | || |||||||| || | || ||| || || Sbjct 10461196 CCCATAAGGGTCTTCACAAAAATCTTCATCTTGCC 10461230 >seq31 Length=11202321 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || | ||||||||| | | ||| || || Sbjct 8040983 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCT 8041042 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || || || || || |||||| |||| | | |||| ||| ||| ||||| || Sbjct 8041043 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGG 8041099 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTT 152113 || || || ||||| || || ||||||||||||| ||||||||| |||| Sbjct 8041100 GTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGACCTT 8041149 >seq319 Length=3946259 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTC--TCCCATCTTCTAGGCTTTTCC 151965 || |||||||| ||||||||||| || | | ||| | |||||||| || ||||| Sbjct 689859 GTGGACTCTTTCTGGATGTTGTAGTCAG--ACAGTACATAGCCATCTTCCAGCTGTTTCC 689916 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | | || || || ||||| |||| | | ||| |||||||| ||||| || || | Sbjct 689917 TGACAAATATCAGTCTCTGTTGGTGAGGTGGGATGCCTTCCTTGTCTTGGATCTTAGTCT 689976 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||||| |||| | ||||| || || |||||||| || || ||| || |||| Sbjct 689977 TGACATTCTCAATAGTGTCTCTGGGCTTGACCTCAAGAGTGATGGTCATGCTTGTCAGAG 690036 Query 152086 TCTTCACGAAGA 152097 |||||| ||||| Sbjct 690037 TCTTCATGAAGA 690048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153363684683991