Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq309 145 5e-30 seq423 118 8e-22 seq154 118 8e-22 seq6 105 5e-18 seq38 96.9 2e-15 seq3 95.1 9e-15 seq70 87.8 1e-12 seq31 86.0 5e-12 >seq309 Length=1536079 Score = 145 bits (160), Expect = 5e-30 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| || ||||| || ||| || Sbjct 713458 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAA--AGTA--CGA 713403 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || |||||||||| | |||||||| | ||| | ||||||| Sbjct 713402 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCC 713343 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| Sbjct 713342 TTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTG 713283 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||||||||||||||| || ||||| Sbjct 713282 ATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 Score = 145 bits (160), Expect = 5e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| || ||||| || | | || Sbjct 714824 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGG 714765 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || || ||||||| | ||||||||| | ||| | ||||||| Sbjct 714764 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCC 714705 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| Sbjct 714704 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTG 714645 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||||||||||||||| || ||||| Sbjct 714644 ATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 >seq423 Length=2413410 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| || ||||| || | | || Sbjct 7504 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGG 7445 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || | |||||| | ||||||||| | ||| | |||||| Sbjct 7444 CCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCC 7385 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || || ||||| ||| | || |||||||||| | || ||| | ||| | || Sbjct 7384 TTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTG 7325 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || ||||||||||||||||| ||||| Sbjct 7324 ATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287 >seq154 Length=6791889 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||| ||| || |||| || | | || Sbjct 1707856 AGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGG 1707797 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || || ||| ||| | ||||||||| | ||| | |||| | Sbjct 1707796 CCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGC 1707737 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | | | Sbjct 1707736 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATG 1707677 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||||||||||||||| || ||||| Sbjct 1707676 ATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 >seq6 Length=12818899 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || ||||||||||| || | || ||| | || ||| Sbjct 2580484 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 2580425 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| | |||||| || | || | ||| || || ||| Sbjct 2580424 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGG 2580365 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | ||| | |||||||| || || ||||| | || || ||||| Sbjct 2580364 ATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTT 2580306 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||| ||||||||||| ||||| Sbjct 2580305 ACCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276 >seq38 Length=12148825 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||| |||| || ||||| ||| ||||| ||| || |||| || | | || Sbjct 10461007 AGTCTCGACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGT 10461066 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || || ||| ||| | ||||||||| | ||| | |||||| Sbjct 10461067 CCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 10461126 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| |||| ||| | || |||| ||||| | | ||| ||||| | ||| Sbjct 10461127 TTATCCTGGATCTGGGCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGCGTG 10461186 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||| | ||||||||||| || || | ||| Sbjct 10461187 ATGGTTTTCCCCATAAGGGTCTTCACAAAAATCTTCAT 10461224 >seq3 Length=5748141 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/224 (70%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||| | || ||||||||| || ||| ||| || ||||||||||| || | || ||| Sbjct 3927304 CAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCG 3927363 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAA-GATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 | || |||||||||| | |||||| |||| | |||||| |||| || | |||| Sbjct 3927364 GCCATCACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTT 3927423 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 |||| || ||||| ||| | | | |||||||| | || ||||| | | Sbjct 3927424 CCTTATCTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAG 3927483 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || |||| || || ||||||||||| ||||| |||||| || Sbjct 3927484 TGATGTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTTG 3927527 >seq70 Length=7483708 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||| | || ||||||||| | ||| ||| || |||||||| ||||| | || | | Sbjct 5585700 CAGGCGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAG 5585759 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 || |||||||| || || ||||| |||| |||||| |||| || | |||| Sbjct 5585760 GCGATCCTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTC 5585819 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| || ||||| ||| | | | |||||||| | || ||||| | || Sbjct 5585820 CTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGT 5585879 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || ||||| ||||| ||||||||||| ||||| |||||| || Sbjct 5585880 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTTG 5585922 >seq31 Length=11202321 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| || |||||||| | |||||||| || | || | || || || Sbjct 8040986 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTA 8041045 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||| | | | |||||||| || ||||| |||| || || Sbjct 8041046 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 8041105 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||||||||||||||| ||||| Sbjct 8041106 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || ||| ||| || ||||||||||| || | Sbjct 8039941 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 8040000 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || ||||||||||| ||||||||||| | |||||||| |||| || Sbjct 8040001 AGAGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 8040060 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 | || || || ||| ||||| ||||| Sbjct 8040061 ATGCCCTCTTTATCCTGGATCTTGGCCTTCA 8040091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359854737730257