Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq131 147 3e-30 seq872 105 1e-17 >seq131 Length=6132816 Score = 147 bits (162), Expect = 3e-30 Identities = 204/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || |||||| || |||||||| | || | |||| |||| Sbjct 4275346 AAGGGACAGCCCTTCACATTATTACAGATGAGTGACTGAATGGAAGCAGTGTTGATGATC 4275405 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| ||||| || || ||||| ||||||||||| || || |||||| Sbjct 4275406 TTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 4275465 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 4275466 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 4275525 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| | ||||| ||||||||||||| | | | |||||||||| || |||| | Sbjct 4275526 ATGGCATCCGGACGCGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 4275585 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | || || || || ||||| ||||||| Sbjct 4275586 TCACTGTAGAGGGCTTCCAACTCCGCGGCCATTTCCTTCTCTCCTG 4275631 Score = 138 bits (152), Expect = 2e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313 |||||||||| | ||| || ||| || ||||| || ||||||| |||||||||| Sbjct 4276918 TGGTCTGGAATAACCTCTCATCGTCCCACTCAGGATGCTCCCGTTTCAGCACATCGCACA 4276977 Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373 | |||||||| |||| |||||||| || || |||||||| || ||||||||||| |||| Sbjct 4276978 CTCTGTTGTGCTCCCGAAGCCAGATCGTAGCATACATCATCAGACCAGGTACCAGACCAA 4277037 Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433 | |||| || || ||||| | |||| || || || | || || |||||||| | Sbjct 4277038 AGACCTCCTGGCCCACAGCAAACCGCAGGTGCTCAGGGGTGTGAGGGGGGTAGATCATTT 4277097 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 ||||| ||||||||| | || || |||| || || ||||| Sbjct 4277098 CCACCTCAGTGTCTTTGACTGTAGGAGGGTACACCTCGCCATCAAT 4277143 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||| ||||| | || ||||| | ||| ||| | || Sbjct 4278309 TCTTACCCCATGGCCCAGTCCTCGGGTGAATCCAGGTCCTCGTTTCTGATCTGTCTTGAA 4278368 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || |||||||| ||| |||| || |||||||| | || ||||| ||||| || Sbjct 4278369 AAACTGATGAGTGAAATGCTGGGCAAAGAATGCAAACATCATATTCGTGCCTTGGGGGTC 4278428 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || ||||| | |||| || ||| |||||||| ||| Sbjct 4278429 AGGGATGAAGTTTCTCCTTAGGAGAACTTTTTCCAGAAC 4278467 Score = 89.7 bits (98), Expect = 7e-13 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| |||||||| || ||| | ||||| || || || | |||||| | ||||| Sbjct 4276435 CTTACCCGGCCGGCGATCTGTCTGGTGAATGACTCCACAAACTGGGTGAGTCCGTGTTCA 4276494 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTT-TGTTTTATCAATCTC 9062 | ||| ||||| |||||||||| ||| | | ||| |||| || | | || |||| Sbjct 4276495 ACGAGGATGGAGTTGTTGTAGAGGAACTGTTTGAAGTTGTACTCCTGCTCT-TCGATCTG 4276553 Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122 ||| | || |||| |||| ||||||||||| | |||| || || | || || Sbjct 4276554 AAAGGTGTCAGGCAGCAGAGGGTGCCAGTGATAGAGTGTGTTGAATTCAGCTGCAATGCG 4276613 Query 9123 ATTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181 || |||||||||||| | | ||| ||||| || || | ||| || | || | Sbjct 4276614 GTTCTGGTACTGGAACTGCTGGTTGAAA-AGCAGCTCCGGGTCGAACTTGAGTTTGAAGT 4276672 Query 9182 GGTAGCCGCTGAGCTGCTGAACGTA 9206 ||||||| || || ||||| ||||| Sbjct 4276673 GGTAGCCACTCAGGTGCTGCACGTA 4276697 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || || | || || ||||| || || | | Sbjct 4279053 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACTGGAGGAAGGGCTCTGGTG 4279112 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| |||||||| || |||||| || ||| | |||| | | ||||| | Sbjct 4279113 TAGTAGGAGAGGTTGGAGAAGGCCTCCCAGTTTTTGTAACCATAGTGCACATTGTAAGTT 4279172 Query 10028 GGAGGGCTGTCAATCAAATCGGATCT 10053 || || ||||||||||||| ||||| Sbjct 4279173 GGTGGACTGTCAATCAAATGTGATCT 4279198 >seq872 Length=978185 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| |||||||||||| ||| || || Sbjct 53732 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGTTGCTCGTCATCCCAGGTGGGGTGC 53791 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | |||||| | |||||||| | |||||| || | | |||||| |||| | | | Sbjct 53792 TCCTCTTTCAGCAAGTCGCACACGCGGTTGTGCTCACGCAACCAGATCGTGGAGATGACC 53851 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 || ||||| || | || ||||| |||| || || ||||||| Sbjct 53852 ATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACAGCCA 53894 Score = 102 bits (112), Expect = 1e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || || || |||||||||||||| ||| | || || || ||| || Sbjct 45747 GAAACCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 45806 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | ||| || |||||||| || |||||||| | ||| | || ||||| || ||||| Sbjct 45807 TCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGAT 45866 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || |||||| | |||||||| | | || | ||| | ||| | ||| |||| ||| Sbjct 45867 GGAGTTGGGCTGACACTTTTCCAGAAGTAGCCCCGGGTAGAACTCTAAAGCATCGATGTC 45926 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | | | || || || |||||||| ||||||| Sbjct 45927 ACCATATAACTCTTCCAACTCAGCGGCCATCTCCTTCTCTCCTG 45970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716599718155840