Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq131 147 3e-30
seq872 105 1e-17
>seq131
Length=6132816
Score = 147 bits (162), Expect = 3e-30
Identities = 204/286 (71%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359
|| ||||| ||||| || || |||||| || |||||||| | || | |||| ||||
Sbjct 4275346 AAGGGACAGCCCTTCACATTATTACAGATGAGTGACTGAATGGAAGCAGTGTTGATGATC 4275405
Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419
|| ||||| ||||| || || ||||| ||||||||||| || || ||||||
Sbjct 4275406 TTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 4275465
Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479
|| |||| || ||||| | |||||| || || || | || | ||| |||| || |||
Sbjct 4275466 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 4275525
Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539
||||| | ||||| ||||||||||||| | | | |||||||||| || |||| |
Sbjct 4275526 ATGGCATCCGGACGCGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 4275585
Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| | ||| ||||| | || || || || ||||| |||||||
Sbjct 4275586 TCACTGTAGAGGGCTTCCAACTCCGCGGCCATTTCCTTCTCTCCTG 4275631
Score = 138 bits (152), Expect = 2e-27
Identities = 166/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313
|||||||||| | ||| || ||| || ||||| || ||||||| ||||||||||
Sbjct 4276918 TGGTCTGGAATAACCTCTCATCGTCCCACTCAGGATGCTCCCGTTTCAGCACATCGCACA 4276977
Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373
| |||||||| |||| |||||||| || || |||||||| || ||||||||||| ||||
Sbjct 4276978 CTCTGTTGTGCTCCCGAAGCCAGATCGTAGCATACATCATCAGACCAGGTACCAGACCAA 4277037
Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433
| |||| || || ||||| | |||| || || || | || || |||||||| |
Sbjct 4277038 AGACCTCCTGGCCCACAGCAAACCGCAGGTGCTCAGGGGTGTGAGGGGGGTAGATCATTT 4277097
Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479
||||| ||||||||| | || || |||| || || |||||
Sbjct 4277098 CCACCTCAGTGTCTTTGACTGTAGGAGGGTACACCTCGCCATCAAT 4277143
Score = 111 bits (122), Expect = 2e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||| ||||| | || ||||| | ||| ||| | ||
Sbjct 4278309 TCTTACCCCATGGCCCAGTCCTCGGGTGAATCCAGGTCCTCGTTTCTGATCTGTCTTGAA 4278368
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || |||||||| ||| |||| || |||||||| | || ||||| ||||| ||
Sbjct 4278369 AAACTGATGAGTGAAATGCTGGGCAAAGAATGCAAACATCATATTCGTGCCTTGGGGGTC 4278428
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807
|| ||||| | |||| || ||| |||||||| |||
Sbjct 4278429 AGGGATGAAGTTTCTCCTTAGGAGAACTTTTTCCAGAAC 4278467
Score = 89.7 bits (98), Expect = 7e-13
Identities = 182/265 (69%), Gaps = 4/265 (2%)
Strand=Plus/Plus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| |||||||| || ||| | ||||| || || || | |||||| | |||||
Sbjct 4276435 CTTACCCGGCCGGCGATCTGTCTGGTGAATGACTCCACAAACTGGGTGAGTCCGTGTTCA 4276494
Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTT-TGTTTTATCAATCTC 9062
| ||| ||||| |||||||||| ||| | | ||| |||| || | | || ||||
Sbjct 4276495 ACGAGGATGGAGTTGTTGTAGAGGAACTGTTTGAAGTTGTACTCCTGCTCT-TCGATCTG 4276553
Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122
||| | || |||| |||| ||||||||||| | |||| || || | || ||
Sbjct 4276554 AAAGGTGTCAGGCAGCAGAGGGTGCCAGTGATAGAGTGTGTTGAATTCAGCTGCAATGCG 4276613
Query 9123 ATTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181
|| |||||||||||| | | ||| ||||| || || | ||| || | || |
Sbjct 4276614 GTTCTGGTACTGGAACTGCTGGTTGAAA-AGCAGCTCCGGGTCGAACTTGAGTTTGAAGT 4276672
Query 9182 GGTAGCCGCTGAGCTGCTGAACGTA 9206
||||||| || || ||||| |||||
Sbjct 4276673 GGTAGCCACTCAGGTGCTGCACGTA 4276697
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | |||||||| || || | || || ||||| || || | |
Sbjct 4279053 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACTGGAGGAAGGGCTCTGGTG 4279112
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|| |||||||| |||||||| || |||||| || ||| | |||| | | ||||| |
Sbjct 4279113 TAGTAGGAGAGGTTGGAGAAGGCCTCCCAGTTTTTGTAACCATAGTGCACATTGTAAGTT 4279172
Query 10028 GGAGGGCTGTCAATCAAATCGGATCT 10053
|| || ||||||||||||| |||||
Sbjct 4279173 GGTGGACTGTCAATCAAATGTGATCT 4279198
>seq872
Length=978185
Score = 105 bits (116), Expect = 1e-17
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || |||| |||||| |||||||||||||| |||||||||||| ||| || ||
Sbjct 53732 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGTTGCTCGTCATCCCAGGTGGGGTGC 53791
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| | |||||| | |||||||| | |||||| || | | |||||| |||| | | |
Sbjct 53792 TCCTCTTTCAGCAAGTCGCACACGCGGTTGTGCTCACGCAACCAGATCGTGGAGATGACC 53851
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
|| ||||| || | || ||||| |||| || || |||||||
Sbjct 53852 ATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACAGCCA 53894
Score = 102 bits (112), Expect = 1e-16
Identities = 157/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421
||| ||||| || || || || |||||||||||||| ||| | || || || ||| ||
Sbjct 45747 GAAACCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 45806
Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481
| | ||| || |||||||| || |||||||| | ||| | || ||||| || |||||
Sbjct 45807 TCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGAT 45866
Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541
|| |||||| | |||||||| | | || | ||| | ||| | ||| |||| |||
Sbjct 45867 GGAGTTGGGCTGACACTTTTCCAGAAGTAGCCCCGGGTAGAACTCTAAAGCATCGATGTC 45926
Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| || | | | || || || |||||||| |||||||
Sbjct 45927 ACCATATAACTCTTCCAACTCAGCGGCCATCTCCTTCTCTCCTG 45970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716599718155840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |