Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq309 149 2e-30
seq6 145 2e-29
seq423 136 1e-26
seq31 132 1e-25
seq37 131 4e-25
seq4 100 7e-16
seq3 98.7 2e-15
>seq309
Length=1536079
Score = 149 bits (164), Expect = 2e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || ||||| || ||||| ||||| |||||||| ||| ||| |||
Sbjct 714610 CAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 714669
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| || ||||| || ||||| || |||||
Sbjct 714670 ACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAGCAG 714729
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || |||||||| || || ||||| |||||||| | ||| | | || || || |
Sbjct 714730 AGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATT 714789
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || |||||||| ||||||||
Sbjct 714790 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 714824
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || ||||| || ||||| ||||| |||||||| ||| ||| |||
Sbjct 713248 CAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 713307
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || | || ||||| ||||| || ||||| || ||||| || ||||||
Sbjct 713308 ACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAGCAA 713367
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || ||||| || || || ||||| |||||||| | ||| | || || || |
Sbjct 713368 AGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTT----GAATACAATATT 713423
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || |||||||| ||||||||
Sbjct 713424 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 713458
>seq6
Length=12818899
Score = 145 bits (160), Expect = 2e-29
Identities = 158/208 (76%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || ||||||||||| | || || || || |||||||| ||||| | ||| || |
Sbjct 2580279 CAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCG--AGCCCAGTG 2580336
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| |||||| ||||||||||| || ||||| || |||||||
Sbjct 2580337 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGACCAGC 2580396
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | || || | || || |||
Sbjct 2580397 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 2580456
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || ||||| || ||
Sbjct 2580457 TCCAGAAAGAGTCCACTCTGCACCTGGT 2580484
>seq423
Length=2413410
Score = 136 bits (150), Expect = 1e-26
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || ||||| ||||| ||||| || ||| | ||| |||||||
Sbjct 7290 CAGATCTTCGTGAAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTCAGAC 7349
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || || ||||| |||| || |||||||| ||||| || |||||
Sbjct 7350 ACCATAGAAAATGTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCAGCAG 7409
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | |||||| | || || ||||| |||||||| | ||| | | || || || |
Sbjct 7410 AGGCGGATCTTCACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATT 7469
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || |||||||| ||||||||
Sbjct 7470 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 7504
>seq31
Length=11202321
Score = 132 bits (146), Expect = 1e-25
Identities = 134/172 (78%), Gaps = 7/172 (4%)
Strand=Plus/Minus
Query 177909 AAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG 177968
||||| ||||||| | || |||||||| || || || || || || |||||||| ||
Sbjct 8041149 AAGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAA 8041093
Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026
||||| || ||| ||||||||||||| ||||| ||||| ||||| ||||| || |
Sbjct 8041092 GTGGA--GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCA 8041035
Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
|||| || |||||||| ||||| ||||| || || || ||||| ||||||||
Sbjct 8041034 TCCCCCCTGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGG 8040983
>seq37
Length=11501336
Score = 131 bits (144), Expect = 4e-25
Identities = 164/222 (74%), Gaps = 10/222 (5%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| |||| |||||||| || || || | || || |||||||| ||||
Sbjct 11476892 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCAGCAAGACCATCACCCTAGAGG 11476836
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || || | ||||||||||| ||||| ||||| ||||| |||| || ||
Sbjct 11476835 TGGA--GCCTAGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGATGAAGAGGGCAT 11476778
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
|| || |||||||||||||| ||||| | || || ||||| |||||||| | |||||
Sbjct 11476777 CCTCCCTGACCAGCAACGACTCATCTTTTCGGGCAAGCAGCTGGAAGATGGCCGCACTCT 11476718
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| | || | || |||| |||| || || ||||| || ||
Sbjct 11476717 TTCTGACT---ACATCCAGAAAGGGTCCACCCTGCACCTGGT 11476679
>seq4
Length=18898765
Score = 100 bits (110), Expect = 7e-16
Identities = 143/197 (73%), Gaps = 7/197 (4%)
Strand=Plus/Minus
Query 177935 GAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAG 177992
|| ||| || || || || || |||||||| ||| |||| || || |||||||||||
Sbjct 11612852 GAGAACCCTGACTGGCAAGACCATCACCCTAGAGATGGA--GCCTAGTGACACCATCGAG 11612795
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| || || ||||| || || ||||| || ||||| || |||||| | |||| |
Sbjct 11612794 AATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCC-CCTGACCAGTAGTGACTCA-- 11612738
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
|| ||| | || ||||| |||||| | | |||||| | || || ||| |||| |||||
Sbjct 11612737 TTTGCCAGCAAGCAGCTGGAAGATAGCCGCACTCTTTCTGACTACAACATCCAGAAAGAG 11612678
Query 178113 TCAACACTGCATCTTGT 178129
|| || ||||| || ||
Sbjct 11612677 TCCACCCTGCACCTGGT 11612661
>seq3
Length=5748141
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/209 (71%), Gaps = 5/209 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || ||||| || | ||||| || ||||| || || ||
Sbjct 3927520 CAGATCTTTGTGAAGACCCTGACAGGCAAGAACATCACTCTAGAGGTCGA--GCCTAGTG 3927463
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| || || || ||||| ||||| || |||||||
Sbjct 3927462 ACACCATCGAGAATGTCAAGGTCAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAGC 3927403
Query 178042 AACGACTTAT-CTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
| | || || || ||| | || ||||| | ||||| | || || | || || |||
Sbjct 3927402 AGAGGCTGATAATTTGCCAGCAAGCAGCTGGGTGATGGCCGCACCCTGTCAGACTACAAC 3927343
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || ||||| || ||
Sbjct 3927342 ATCCAGAAAGAGTCCACCCTGCACCTGGT 3927314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203254311415674
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |