Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq309 149 2e-30 seq6 145 2e-29 seq423 136 1e-26 seq31 132 1e-25 seq37 131 4e-25 seq4 100 7e-16 seq3 98.7 2e-15 >seq309 Length=1536079 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || ||||| ||||| |||||||| ||| ||| ||| Sbjct 714610 CAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 714669 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || ||||| || ||||| || ||||| Sbjct 714670 ACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAGCAG 714729 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||| || || ||||| |||||||| | ||| | | || || || | Sbjct 714730 AGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATT 714789 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 714790 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 714824 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || ||||| ||||| |||||||| ||| ||| ||| Sbjct 713248 CAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 713307 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || | || ||||| ||||| || ||||| || ||||| || |||||| Sbjct 713308 ACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAGCAA 713367 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | ||| | || || || | Sbjct 713368 AGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTT----GAATACAATATT 713423 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 713424 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 713458 >seq6 Length=12818899 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| | || || || || |||||||| ||||| | ||| || | Sbjct 2580279 CAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCG--AGCCCAGTG 2580336 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| ||||||||||| || ||||| || ||||||| Sbjct 2580337 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGACCAGC 2580396 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 2580397 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 2580456 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 2580457 TCCAGAAAGAGTCCACTCTGCACCTGGT 2580484 >seq423 Length=2413410 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| ||||| ||||| || ||| | ||| ||||||| Sbjct 7290 CAGATCTTCGTGAAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTCAGAC 7349 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||| || |||||||| ||||| || ||||| Sbjct 7350 ACCATAGAAAATGTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCAGCAG 7409 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||| | || || ||||| |||||||| | ||| | | || || || | Sbjct 7410 AGGCGGATCTTCACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATT 7469 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 7470 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 7504 >seq31 Length=11202321 Score = 132 bits (146), Expect = 1e-25 Identities = 134/172 (78%), Gaps = 7/172 (4%) Strand=Plus/Minus Query 177909 AAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG 177968 ||||| ||||||| | || |||||||| || || || || || || |||||||| || Sbjct 8041149 AAGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAA 8041093 Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 ||||| || ||| ||||||||||||| ||||| ||||| ||||| ||||| || | Sbjct 8041092 GTGGA--GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCA 8041035 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 |||| || |||||||| ||||| ||||| || || || ||||| |||||||| Sbjct 8041034 TCCCCCCTGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGG 8040983 >seq37 Length=11501336 Score = 131 bits (144), Expect = 4e-25 Identities = 164/222 (74%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || | || || |||||||| |||| Sbjct 11476892 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCAGCAAGACCATCACCCTAGAGG 11476836 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || || | ||||||||||| ||||| ||||| ||||| |||| || || Sbjct 11476835 TGGA--GCCTAGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGATGAAGAGGGCAT 11476778 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||||||||| ||||| | || || ||||| |||||||| | ||||| Sbjct 11476777 CCTCCCTGACCAGCAACGACTCATCTTTTCGGGCAAGCAGCTGGAAGATGGCCGCACTCT 11476718 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | || | || |||| |||| || || ||||| || || Sbjct 11476717 TTCTGACT---ACATCCAGAAAGGGTCCACCCTGCACCTGGT 11476679 >seq4 Length=18898765 Score = 100 bits (110), Expect = 7e-16 Identities = 143/197 (73%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 177935 GAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAG 177992 || ||| || || || || || |||||||| ||| |||| || || ||||||||||| Sbjct 11612852 GAGAACCCTGACTGGCAAGACCATCACCCTAGAGATGGA--GCCTAGTGACACCATCGAG 11612795 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || || ||||| || || ||||| || ||||| || |||||| | |||| | Sbjct 11612794 AATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCC-CCTGACCAGTAGTGACTCA-- 11612738 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || ||| | || ||||| |||||| | | |||||| | || || ||| |||| ||||| Sbjct 11612737 TTTGCCAGCAAGCAGCTGGAAGATAGCCGCACTCTTTCTGACTACAACATCCAGAAAGAG 11612678 Query 178113 TCAACACTGCATCTTGT 178129 || || ||||| || || Sbjct 11612677 TCCACCCTGCACCTGGT 11612661 >seq3 Length=5748141 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/209 (71%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || | ||||| || ||||| || || || Sbjct 3927520 CAGATCTTTGTGAAGACCCTGACAGGCAAGAACATCACTCTAGAGGTCGA--GCCTAGTG 3927463 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || || ||||| ||||| || ||||||| Sbjct 3927462 ACACCATCGAGAATGTCAAGGTCAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAGC 3927403 Query 178042 AACGACTTAT-CTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 | | || || || ||| | || ||||| | ||||| | || || | || || ||| Sbjct 3927402 AGAGGCTGATAATTTGCCAGCAAGCAGCTGGGTGATGGCCGCACCCTGTCAGACTACAAC 3927343 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 3927342 ATCCAGAAAGAGTCCACCCTGCACCTGGT 3927314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203254311415674