Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 1e-20
seq3 100 3e-16
seq31 98.7 9e-16
seq70 93.3 4e-14
>seq6
Length=12818899
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||
Sbjct 2580493 AGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 2580434
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || ||||| | ||| ||||| | ||| | | |||
Sbjct 2580433 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCT 2580374
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| ||| ||| ||| | | | ||||| || | ||| ||||| | ||
Sbjct 2580373 TTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTG 2580314
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || ||||| || | || || ||||| ||||||||
Sbjct 2580313 ATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276
>seq3
Length=5748141
Score = 100 bits (110), Expect = 3e-16
Identities = 156/222 (70%), Gaps = 1/222 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||
Sbjct 3927305 AGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGG 3927364
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAAT-ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTC 41763
| || | |||||||||| ||| ||| ||||| | ||| ||||| | || | || ||
Sbjct 3927365 CCATCACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTC 3927424
Query 41764 CTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
||| || ||| || ||| | | | ||||| || | ||| ||||| | ||
Sbjct 3927425 CTTATCTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGT 3927484
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| | || || ||||| ||||| || || |||||||||||
Sbjct 3927485 GATGTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTT 3927526
>seq31
Length=11202321
Score = 98.7 bits (108), Expect = 9e-16
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| ||| ||| ||||| ||||| ||||| || || ||||||
Sbjct 8039950 AGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGC 8040009
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || || || ||||| ||||| | ||| | || |||
Sbjct 8040010 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCT 8040069
Query 41765 TTGTCCATGATTTTTTGCTTCA 41786
|| ||| ||| || |||||
Sbjct 8040070 TTATCCTGGATCTTGGCCTTCA 8040091
Score = 86.0 bits (94), Expect = 6e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| || || || || ||||| ||||| | |||
Sbjct 8040974 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 8041033
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| || ||| || ||| ||| || ||| | | | ||||| || | ||||||
Sbjct 8041034 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACT 8041093
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| || || || || || ||||| ||||| ||||| |||||||| ||
Sbjct 8041094 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 8041143
>seq70
Length=7483708
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||| |||| ||| ||| ||||| ||||| || || || |||||| |
Sbjct 5585701 AGGCGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGG 5585760
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|| || ||||| ||||| || |||||||| ||| ||||| | || | | |||
Sbjct 5585761 CGATCCTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCC 5585820
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| ||| || ||| | | | ||||| || | ||| ||||| | ||
Sbjct 5585821 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTG 5585880
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || |||||||| ||||| || || |||||||||||
Sbjct 5585881 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 5585921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462125313725200
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