Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1392435 132 3e-26 seq1379405 131 1e-25 seq1459367 104 2e-17 seq1374493 102 6e-17 seq1078606 87.8 1e-12 >seq1392435 Length=4537 Score = 132 bits (146), Expect = 3e-26 Identities = 279/422 (66%), Gaps = 47/422 (11%) Strand=Plus/Minus Query 3978 CTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCT-TCTTGCACATTAGAAAGAA 4036 ||||||||| |||||| || ||||| | ||||| || || || || | |||||| | Sbjct 1052 CTTCTCATAGACTTCAGGTTCATACTTGGTGCTTTTTTCCCTCCTGGACCTCAGAAAGGA 993 Query 4037 CACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGT 4096 ||| || |||||| | |||||| ||| || | | ||||| |||||| |||| ||| Sbjct 992 CACCTGAGTATTCTGAGAGAAGTTTATATCTCCCCAAATCAATTTCTGGGAAAACCATGT 933 Query 4097 CACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCA 4156 ||| ||| | || ||||||||||| ||| || |||| || | | ||| | Sbjct 932 CACTTTCTGATTCCTGCATGATCCTTGTCCCA----GTTTGAGGTGACCTGGCT------ 883 Query 4157 TAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTA 4216 || ||| ||| ||||| ||||||||| || Sbjct 882 --GC------------------------------CCACACCTTGTCTGCTTTATTTGGTA 855 Query 4217 ATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTC 4276 |||| ||||| | |||||||||| |||| || | || || || | | ||||||||| Sbjct 854 ATTC---CTGTTAG-TAAGTTTTAAGGCATTGTCCAGGCTTTTGGCAAGAGAATGAGCTC 799 Query 4277 TATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCC 4336 ||||| | ||||| || || | |||||||| |||||||| | ||||| ||| Sbjct 798 CTTGTGGTGGTTCCTTGAGGTCTCTACTGAGAACTGTGTTAATTCTATCCTTTAACAGCC 739 Query 4337 GGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTAT 4396 |||| |||||||||| |||| ||| || || ||| |||||| | | | ||||||| Sbjct 738 GGTTTTTCTCAGGAACAGAGATCCAGGTTTTCCCACCTATAATCTCCAGGTCCTGTTTAC 679 Query 4397 CT 4398 || Sbjct 678 CT 677 >seq1379405 Length=4222 Score = 131 bits (144), Expect = 1e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| |||| | | ||||||| | |||||| ||||| || ||| |||||||||||| Sbjct 3456 TTAGGCTACGTGCCGGACAATGGAGGAAACGCAGGTGCAACCCACACCCACTAGCATCTT 3397 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 ||| | | || || ||||| | || | | |||| || || |||||||| Sbjct 3396 CTCCATGCGGAAGGAGAGGGGGCACTTCCCAGGCTCCCTCCGCAGGACAAGGATCTCTTG 3337 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115 ||||| | || ||||||||||||| ||| | ||||| ||||| || ||||| | Sbjct 3336 CTGGATGAGAACAGAGTTCATGTGGTGGTCCAACTTCCCCTCAGCGTTGACACAGCGCTG 3277 Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| ||||| |||||||||||||| | || |||||||| Sbjct 3276 GTGGCGGCACTGTGCCTCCCAGATCACGGAGGGATATCTATCGGGGTCCTCATTGCG 3220 >seq1459367 Length=11300 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||||||||||||| | | ||||| |||||| || || ||||||| |||||| || ||||| Sbjct 5661 AAGTTTGTATTTCCCCATATCAATTTCTGGGAAGAACGTGTCACTTTCAAATTCCTGCAT 5602 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| | |||| || ||| | | ||| ||||| || | ||| | Sbjct 5601 GATCCTTGTCACAAAGAGTCTGAGATGGCCTGGCTGATCCATGGCTTCCTTTAAAACAAA 5542 Query 4176 AC 4177 || Sbjct 5541 AC 5540 >seq1374493 Length=4116 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | |||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 2927 CTTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 2868 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||||| ||||||||| || Sbjct 2867 AATGGAGAACCAGGTTTTCCGGCCCATAATCACTAGGTTCTGTTTACCT 2819 >seq1078606 Length=1666 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26948 GTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAA 27007 ||| || ||||||| ||| || |||||||| || |||| ||||||||||| ||||| || Sbjct 1368 GTGGACGATGGGAGCAACACAAGTGCAGCCAACTTTCACCAGCATCTTCTCCAGCCTGAA 1309 Query 27008 TGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGAC 27067 ||||||| ||| || || | | | | ||||| || ||||| ||||||| || Sbjct 1308 GGAATTAGAACAGCCCTGGGGCTCCCTCCTGAGGACTAGGATTTCTTGCTGGATAGCAAC 1249 Query 27068 TGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTT 27127 ||||||||| | |||| | | || | ||||| | || ||| | || |||| Sbjct 1248 GGAGTTCATGGAGCTGTCTTCCTGTCCCTGCGCATTGATGCAGCCTGAATATTTGCACTG 1189 Query 27128 TGCTTCCCAAATCACAGAGGG 27148 || ||| |||| | ||||| Sbjct 1188 GGCCTCCGCAATCTCTGAGGG 1168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354813817410128