Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1457431 288 1e-72 seq1329907 120 4e-22 seq1252348 114 1e-20 seq1108254 100 3e-16 >seq1457431 Length=10131 Score = 288 bits (318), Expect = 1e-72 Identities = 600/884 (68%), Gaps = 15/884 (2%) Strand=Plus/Plus Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546 || |||||| || |||| | ||||||| || | || || | || |||||| ||| Sbjct 1818 CTGGTGTTTATCATTGGCCTCCTGGGCAACATTGTGGTTTTGTTGATCCTCATAAAGTAC 1877 Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606 | |||| || || | ||||| || | || | ||||||||||| |||||| |||| Sbjct 1878 AGGAAGCTCCGAATTATGACTAATATCTACTTGCTCAACTTGGCAATTTCTGACCTGCTC 1937 Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666 ||||| || ||| | ||||| ||||| |||||| || |||| |||| ||| |||| Sbjct 1938 TTTCTCTTCACTGTCCCATTCTGGATTCACTATGTT---ATGTGGAATGAATGGGGTTTT 1994 Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 || | | |||||||||| ||| || ||| |||| | | |||||||| | || Sbjct 1995 GGCCATCACATGTGTAAACTAATCACTGGGTTGTATTACCTTGCCTTGTACAGCGAAATC 2054 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 9786 |||| |||||||||||| ||| | |||||||| || || ||||| ||||||| |||| Sbjct 2055 TTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGTCCATGCTGTGTTTGCT 2114 Query 9787 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 9846 | || | ||||| || | || | | ||| | | || ||| |||||| Sbjct 2115 CTCAGAGCCCGGACAGTGACTTTTGCTACCATCACCAGCATCATCACTTGGGGACTGGCA 2174 Query 9847 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGG-- 9904 || ||| | ||||||||||| |||| |||| |||||| | ||| || | Sbjct 2175 GGTTTGGCAGCATTCCCTGAATTTATCTTCCATGAGTCCCAAGACATCTTTGG-AGAGCA 2233 Query 9905 -TTCAGTGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGT 9962 ||| |||| |||| | |||||||| | || | || | |||| || ||| | Sbjct 2234 TTTC--TGTGGTCCTCATTACCCAGA-AGGTGAAGAAGACAGCTGGAAGCATTTCCATGC 2290 Query 9963 TGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTA 10022 | | ||| ||| || |||| | | ||||| |||||||||| | ||||||||| Sbjct 2291 TCTGAGAATGAATATCTTTGGTCTAGCTCTCCCTCTACTCATTATGGTTATCTGCTACTC 2350 Query 10023 TGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCT 10082 | ||| || | || ||| |||| |||| | ||| || ||||||||||| || |||| Sbjct 2351 GGGAATCATTAAAACTCTGCTGAGATGCCCGAACAAAAAAAAGTACAAGGCAATTCGGCT 2410 Query 10083 CATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 10142 || |||| ||||| | | || |||| |||||||||| || |||||| | |||||||| Sbjct 2411 TATTTTTGCTGTCATGATAGTCTTTTTTATTTTTTGGACCCCATACAACCTGGTTCTCCT 2470 Query 10143 ACTGTCTACCTTTCAC-GCAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTG 10200 || ||| | |||||| ||| | || ||| ||| ||| | ||||| || || Sbjct 2471 TCTCTCTGCTTTTCACAGCA--CATTTTTAGAGAACAGCTGTCAACAGAGCAAACACCTG 2528 Query 10201 GACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTG 10260 ||| |||| ||| | | || | | ||||| || ||||| || ||||||||| | Sbjct 2529 GACCTGGCCATGCAGGTGACTGAGGTGATTGCCTATACCCACTGCTGTATCAACCCAATA 2588 Query 10261 ATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTAC 10320 ||||| || || || || |||| ||| | | |||||| | ||| ||| ||| | Sbjct 2589 ATCTATGCCTTTGTTGGCGAGAGGTTCCGGAAACACCTTCGGCTCTTTTTCAACAGACAT 2648 Query 10321 GTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364 ||||| |||||||| | || || || || ||| | ||||||| Sbjct 2649 GTGGCAATCTACCTGGGAAAATATATTCCATTCTTTCCTGGTGA 2692 Score = 288 bits (318), Expect = 1e-72 Identities = 600/884 (68%), Gaps = 15/884 (2%) Strand=Plus/Plus Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432 || |||||| || |||| | ||||||| || | || || | || |||||| ||| Sbjct 1818 CTGGTGTTTATCATTGGCCTCCTGGGCAACATTGTGGTTTTGTTGATCCTCATAAAGTAC 1877 Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492 | |||| || || | ||||| || | || | ||||||||||| |||||| |||| Sbjct 1878 AGGAAGCTCCGAATTATGACTAATATCTACTTGCTCAACTTGGCAATTTCTGACCTGCTC 1937 Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552 ||||| || ||| | ||||| ||||| |||||| || |||| |||| ||| |||| Sbjct 1938 TTTCTCTTCACTGTCCCATTCTGGATTCACTATGTT---ATGTGGAATGAATGGGGTTTT 1994 Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 || | | |||||||||| ||| || ||| |||| | | |||||||| | || Sbjct 1995 GGCCATCACATGTGTAAACTAATCACTGGGTTGTATTACCTTGCCTTGTACAGCGAAATC 2054 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 176672 |||| |||||||||||| ||| | |||||||| || || ||||| ||||||| |||| Sbjct 2055 TTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGTCCATGCTGTGTTTGCT 2114 Query 176673 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 176732 | || | ||||| || | || | | ||| | | || ||| |||||| Sbjct 2115 CTCAGAGCCCGGACAGTGACTTTTGCTACCATCACCAGCATCATCACTTGGGGACTGGCA 2174 Query 176733 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGG-- 176790 || ||| | ||||||||||| |||| |||| |||||| | ||| || | Sbjct 2175 GGTTTGGCAGCATTCCCTGAATTTATCTTCCATGAGTCCCAAGACATCTTTGG-AGAGCA 2233 Query 176791 -TTCAGTGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGT 176848 ||| |||| |||| | |||||||| | || | || | |||| || ||| | Sbjct 2234 TTTC--TGTGGTCCTCATTACCCAGA-AGGTGAAGAAGACAGCTGGAAGCATTTCCATGC 2290 Query 176849 TGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTA 176908 | | ||| ||| || |||| | | ||||| |||||||||| | ||||||||| Sbjct 2291 TCTGAGAATGAATATCTTTGGTCTAGCTCTCCCTCTACTCATTATGGTTATCTGCTACTC 2350 Query 176909 TGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCT 176968 | ||| || | || ||| |||| |||| | ||| || ||||||||||| || |||| Sbjct 2351 GGGAATCATTAAAACTCTGCTGAGATGCCCGAACAAAAAAAAGTACAAGGCAATTCGGCT 2410 Query 176969 CATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 177028 || |||| ||||| | | || |||| |||||||||| || |||||| | |||||||| Sbjct 2411 TATTTTTGCTGTCATGATAGTCTTTTTTATTTTTTGGACCCCATACAACCTGGTTCTCCT 2470 Query 177029 ACTGTCTACCTTTCAC-GCAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTG 177086 || ||| | |||||| ||| | || ||| ||| ||| | ||||| || || Sbjct 2471 TCTCTCTGCTTTTCACAGCA--CATTTTTAGAGAACAGCTGTCAACAGAGCAAACACCTG 2528 Query 177087 GACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTG 177146 ||| |||| ||| | | || | | ||||| || ||||| || ||||||||| | Sbjct 2529 GACCTGGCCATGCAGGTGACTGAGGTGATTGCCTATACCCACTGCTGTATCAACCCAATA 2588 Query 177147 ATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTAC 177206 ||||| || || || || |||| ||| | | |||||| | ||| ||| ||| | Sbjct 2589 ATCTATGCCTTTGTTGGCGAGAGGTTCCGGAAACACCTTCGGCTCTTTTTCAACAGACAT 2648 Query 177207 GTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250 ||||| |||||||| | || || || || ||| | ||||||| Sbjct 2649 GTGGCAATCTACCTGGGAAAATATATTCCATTCTTTCCTGGTGA 2692 >seq1329907 Length=3381 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | ||||||||| || |||| |||||||| |||||||||||| Sbjct 631 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGGAGGGCATAGCTGGCAATGTTGAAGGGC 572 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || |||| ||||| || || || | |||||| || ||||| || || ||||| || Sbjct 571 ACACCCAAACCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGTTCCCCATTTACC 512 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||| || || || ||||| || ||||| ||||| Sbjct 511 ACATAGAATTGACAGAGTGCATGGCAAGGAGGCAGTGCCAT 471 >seq1252348 Length=2602 Score = 114 bits (126), Expect = 1e-20 Identities = 111/142 (78%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 138099 CCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCCTT--TTCCTGGTCGGTG 138156 ||||||||| || ||||| || ||||||||||||| | ||||| || |||| | Sbjct 965 CCTGAGGGTCTTCAGCTTCTCTCCCAGGGAGTTCAAATGCTCCTTGATTTCTGG-----G 1019 Query 138157 CTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCATCTCAGACAGG 138216 | ||| | || |||||||||||||| ||| ||||||||||||||||||| || || | | Sbjct 1020 CCATGGCTTTCTGCCTGGGGCATCACTTCCACCAGGTAAAACTGGATCATTTCCGATAAG 1079 Query 138217 GCCTGGCAGCCCAGGTAACCCT 138238 | ||||| |||| |||||||| Sbjct 1080 GTTTGGCAACCCAAGTAACCCT 1101 >seq1108254 Length=1785 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983 || ||||||| || |||||||||| || |||||| |||| ||||||||||| || || Sbjct 212 AGCTTTTCATTTTGATGGTCATGTATGCTTCTATGCAGTTGATGAAGATGTCGAATTCAT 153 Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||||||||||| ||||| || ||||||| Sbjct 152 TCATGGCCTTGTAGACGCCTTTCTCTTGGAGCT 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579292202357120