Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1416469 226 3e-54 seq1369269 93.3 5e-14 >seq1416469 Length=5339 Score = 226 bits (250), Expect = 3e-54 Identities = 269/362 (74%), Gaps = 2/362 (1%) Strand=Plus/Minus Query 83033 TAGTAGCCGC-GCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGT 83091 ||| |||| | | |||| | ||| |||||||| || ||||| || || | | | | ||| Sbjct 1953 TAGGAGCCACTGGGCTG-CTGGGACAGCAGGGCTTCTATGTCAGGTTCGATGTCGATGGT 1895 Query 83092 CTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC 83151 | ||||| |||||||||||||||| || |||||| | ||||||| ||||||||| Sbjct 1894 GCGAAAGCGGCGGCTGTACCTGCGCACTGGAACGCCGTCGGGGCCCACCAGGAACTTCTC 1835 Query 83152 GAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCT 83211 ||||||||||| | ||||||||||||||| |||||||| ||| || ||||||| | Sbjct 1834 AAAGTTCCAGGCAATGTCGTTGCGGCACACCGGAGACCAAATGATGTACTTGGGGTCGGT 1775 Query 83212 CACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAG 83271 || ||||| | || || || ||||| |||| || ||| || ||||||| ||||| Sbjct 1774 CATGAGCGCAGTGGGATCATCACTGGGCGCTGGCAAGGACTCCCGCAGGAAGGTAAAGAG 1715 Query 83272 CGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA 83331 ||| || ||| | |||| |||||||||||||| ||||| | ||||||| || ||||| Sbjct 1714 CGGGTGAGCCTTCTCACCATTGACCTCGCACTTTTCGAACAATGTAAAGTTGGGTTCGAA 1655 Query 83332 GCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTC 83391 || ||||| |||| | ||| |||||| || ||||| | |||| ||| || || Sbjct 1654 CCCCCCACCAGGTCGGATATACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGCATTCTC 1595 Query 83392 CT 83393 || Sbjct 1594 CT 1593 Score = 154 bits (170), Expect = 2e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || ||||| || |||||||| || ||||| |||| || |||| || |||| Sbjct 1374 CCTGATGTCCAAACTGATTGCACGGGAAACCGAGCACCACCAAGCCACGAGGCCCGAGGC 1315 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||| |||||||||| ||||| ||||| ||| | |||||||||||||| | Sbjct 1314 GTCTCTGCAGATCGTTCATCTCGGTGTAGTCCCGAGTCGTTGTGCCTCAGAGGGACGCGA 1255 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | |||| | ||||||||| || || || | Sbjct 1254 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCCG 1195 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | ||||| || |||||||| ||||| Sbjct 1194 CCAGTGGGCGCGCGGAGAAGGCATACAC 1167 >seq1369269 Length=4009 Score = 93.3 bits (102), Expect = 5e-14 Identities = 182/264 (69%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||| | || |||| | ||| || ||| || |||||| || || ||| Sbjct 1500 GCAGCTGCGTAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTTGCCTCCCGCCTGC 1442 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | |||||| Sbjct 1441 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTATAACTGCA 1382 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | | || |||| ||||| Sbjct 1381 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCGCCCGCATCAGGCTGATCCGACACTAC 1323 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| || ||||| || ||||||| ||||| ||| Sbjct 1322 GTGCAGCTGCTCTACCCTCGAGCCAAGAACGACCGTGTGTGGACTCTGGAGTTCGTGGGC 1263 Query 50648 TGCCTGGACGAGCGCTGCCGGCGC 50671 |||||||||||||| || ||| Sbjct 1262 AAGCTGGACGAGCGCTGTCGACGC 1239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597670064405120