Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq91636 113 4e-20 seq14274 107 2e-18 seq1231921 86.0 5e-12 seq1351965 82.4 6e-11 >seq91636 Length=227 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||||| || ||||| ||||| | |||||| || | || Sbjct 182 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 123 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| |||||||| Sbjct 122 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 63 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | ||| || |||| |||||| |||| ||| |||||| Sbjct 62 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 3 Query 21144 TT 21145 || Sbjct 2 TT 1 >seq14274 Length=203 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||||||||| || ||||| || || | || || || | || Sbjct 6 GAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 65 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||||||| | || || | ||||||||| ||| | ||| || || || Sbjct 66 TTCCAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATC 125 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | ||| || |||| ||||||| ||||| ||| ||||| Sbjct 126 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 185 Query 21143 CTTGCCGGT 21151 ||||||||| Sbjct 186 CTTGCCGGT 194 >seq1231921 Length=2451 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||| ||| |||||||||||||| || || ||||| ||||||| ||| | | || Sbjct 236 GAGCTCCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCCGATAGGATGCAACCATC 295 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||||||| ||||| || | || || | ||||||||| || | ||||||||| | Sbjct 296 CTCCAGCTGCTTGCCAACAAATATCAG-CCCTGCTGGTCAGGTGGGATGCCTTCCTTATA 354 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | || || |||| |||||| || | | ||||| Sbjct 355 TTGGATCTTGGCCTTTACATTCTTGATGGTGTCACTGGGCTCAACCTCAAGACTGATGGT 414 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||||| || | || || ||||| || ||||| ||| Sbjct 415 CTTGCCTGTCATGGTCTTCACAAAGATCTGCATATTG 451 >seq1351965 Length=3703 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | | |||||| |||| ||| |||| || || ||||| ||||||| Sbjct 2191 CCGCCACGAAGGCGGGGCACCAGGTGCATGGTGAACTCTTTCTGGATGTTGTAGTCCGAT 2132 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||| ||||| ||| | || || ||||||||||| || Sbjct 2131 AGGGTGAGACTATCCTCCAGCTGCTTGCCAGCAAACATCAGCCTCTGCTGGTCAGGTGGG 2072 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||| || |||||| Sbjct 2071 ATGCCTTCCTTATCTTGGATCTT 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414734674067648