Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq91636 140 3e-28 seq14274 123 3e-23 seq1304636 105 7e-18 seq339792 100 3e-16 seq1023260 96.9 4e-15 seq649457 93.3 4e-14 seq1357076 87.8 2e-12 seq1398653 82.4 8e-11 >seq91636 Length=227 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 40720 AAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATT 40779 || ||||||||| | || ||||| ||| |||| | | | | |||||| ||| || Sbjct 1 AAGACCATCACCCTGGAGGTCGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATC 60 Query 40780 CTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTG 40839 | ||||| |||||||||||| | |||||||| | || |||| || ||||| |||||| Sbjct 61 CAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTG 120 Query 40840 GACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || | |||||||| |||||||||||||||||||||| |||| ||||| || || Sbjct 121 GAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTC 180 Query 40900 TTGCGCTTGAGGGGCGG 40916 ||||| | ||||| || Sbjct 181 CTGCGCCTCAGGGGTGG 197 >seq14274 Length=203 Score = 123 bits (136), Expect = 3e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 40705 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AAC 40763 || || || || ||||| ||||||||| | || || || ||| |||| | | | ||| Sbjct 203 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAC 144 Query 40764 GCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTA 40823 | | |||| || || | || ||||||||||||||| | |||||||| || ||||||| Sbjct 143 G-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGCAGCGGCTCATCTT 85 Query 40824 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGC 40883 |||||||| |||||||| || | ||||| || || |||||||||||||||||| | Sbjct 84 TGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAGGAGTC 25 Query 40884 CACGCTGCATCTAGT 40898 ||| || || || || Sbjct 24 CACCCTCCACCTGGT 10 >seq1304636 Length=3081 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| | |||||||| || ||||| ||||| ||||||| |||||| || || Sbjct 1746 GGAGAGCGCGTTGTGGCCTTTGCTGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTTGCA 1805 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 | ||||| ||||||||||| || || || ||||||||||| || ||| ||| ||||| Sbjct 1806 TCAATATTCTGGCTCAAGAAGCGGGGACTGATGCCCGGCCTCACCTTCTCCAATGAGCTT 1865 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| || |||| Sbjct 1866 ATCAGCAGAGATGAGG 1881 >seq339792 Length=355 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | ||||| |||||||| ||||| | |||||||| |||||| ||| Sbjct 286 GAGCCATTGTTGAGAGAGAATCCCCGCCGCTTCGTTGTCTTCCCCATCGAATACCATGAC 227 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||| ||||| ||||||||||| | |||||||| Sbjct 226 ATCTGGCAGATGTACAAGAAGGCTGAGGCTTCGTTCTGGACGGCTGAGGAGGT 174 >seq1023260 Length=1473 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCAGTTTCGCCGCCATATTT 117100 ||||||||||||| ||||| || ||| | ||||| || ||| |||| || || ||||| Sbjct 90 TGGTGGCCTTCGCTGCCGTAGAAGGCATTTTCTTCTCTGGGTCGTTT-GCTGCTATATTC 148 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||| ||||| | ||||||||||| || || |||||| |||||||| ||| |||| Sbjct 149 TGGCTGAAGAAGAGAGGCCTCATGCCAGGACTCACTTTCTCAAACGAGCTGATCAGCAGG 208 Query 117161 GACGA 117165 || || Sbjct 209 GATGA 213 >seq649457 Length=677 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| | ||| | || || || | |||| ||||||| | | || || ||| ||| Sbjct 391 ATGCAGACCTTCATGAAGACCCTGATCAGCAAGACCATCATCCTAGAAGTAGAACCCAGT 450 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | || || | || |||||||||||||| ||||||| Sbjct 451 GACACCATCGAAAATGTCAATGCCAAGATCCAGGATAAAGAGGGCATCCCTCCGGACCAT 510 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||| ||||||| | |||||| |||||||| || | | || || | | |||||| Sbjct 511 CAACAGCTCATCTTTGTGGGCAAGCAGCTGGAAGATGGCCACAATCTTCCCTATTACAAC 570 Query 40870 ATCCAGAAGGAGGCCA 40885 |||||||| ||| ||| Sbjct 571 ATCCAGAAAGAGTCCA 586 >seq1357076 Length=3788 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||| |||||| ||| | ||||| ||||| |||| ||||||||| | || || || || Sbjct 1643 AAAAGGCAAATCTTCATGAAAACCCTCACCAGCAAGACCATCACCCTAGAGGTGGAGCCC 1702 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | |||||||| |||| || | | Sbjct 1703 AGGGACACCATTGAGAATGTCAAGGTCAAGATGCAGGACAAAGAAGGCACCCTTCC---C 1759 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || | |||||||| || ||||| || | ||| || | | ||| || | | ||| Sbjct 1760 CAACAGCTACTCATCTTTGCTGGCAAGCAACGGGAAGATGGCCACACTCTTTCCAATTAC 1819 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | |||| ||||| || || Sbjct 1820 AACATCCAGAAATATTCCACCCTGCACCTGGT 1851 >seq1398653 Length=4711 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| |||||||| ||||||||||||||| | ||||| || || ||||| |||||||| Sbjct 3741 GGTGGAGCGTTTTAGTCAGGAGGTGCAGGTTCCAGAGGCTCGATGTTTCTATGGCTTTCA 3800 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 || ||| ||||| || |||||||| ||||| Sbjct 3801 AATTCTCATCGAGAATGTTCACTCGGAGATGTA 3833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505802744769280