Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1328747 1169 0.0 seq1430035 136 3e-27 seq1007299 111 1e-19 >seq1328747 Length=3365 Score = 1169 bits (1296), Expect = 0.0 Identities = 1059/1325 (80%), Gaps = 11/1325 (1%) Strand=Plus/Minus Query 107315 GAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTG 107374 |||||||| | |||||||||| | || || | ||||| ||||| || ||||||| Sbjct 2643 GAAGATGGTTTTGTGGAAGAAGG---TCTGTTGGCGCTATCATGTGTGGACCGTGGGCTG 2587 Query 107375 CTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGT-AG 107433 ||| |||||||||||||| | | |||| ||| |||||||| | || ||||| | || Sbjct 2586 CTACATGCTGCTGGCCGTCATCGCCCTGAAACTGTCCCTCAGACTGAAGTGTGACTTCAG 2527 Query 107434 ATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACA 107493 |||| | | ||||| || | | || || || || ||||| ||||| | |||||| Sbjct 2526 TGTCCTAG-ACCTGGACTCAAATGGATTTCAAAGCCATCACTGCAGGGATTTCCTGTACA 2468 Query 107494 ATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACC 107553 | | |||||||||||||||||| || |||||||||||||||||| |||| |||||||| | Sbjct 2467 AGAACCTGAAGCTGCCAGCAAACAGGTCCATCAACTGTTCTGGGGTCACTCGAGGGGAGC 2408 Query 107554 AGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTC 107613 | |||||||| ||||||| || || |||||||||| | ||||| |||||| ||| Sbjct 2407 ACAAAGCAGTGATCCAGGCTCTGCTGAACAACCTGGAGATTAAGAAGAAGCGGCAGCCCT 2348 Query 107614 TCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA 107673 |||| | || | ||||| | ||| || ||||||||||| | |||| || |||||| Sbjct 2347 TCACGGAGGCCGACTACCTTAGCATGACAGCAGACTGTGAGCAATACAAGACCAAAAGGA 2288 Query 107674 AGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGG 107733 |||||||||||||| ||||||| |||| |||| |||||||||||||| || || |||| Sbjct 2287 AGTTCATACAGTTCTCACTGAGCAAAGGAGAGGCCGACTTCCCCATTGCATATTCCATGG 2228 Query 107734 TGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGA 107793 |||| |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| Sbjct 2227 TGGTTCATGAGAAGATTGAGAACTTTGAAAGGCTGCTGCGAGCTGTGTATGCCCCTCAGA 2168 Query 107794 ACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGG 107853 |||||||||||||||| ||||| |||||||||||| || ||||| |||| |||| || Sbjct 2167 ACATATACTGTGTCCATGTGGACCAGAAGTCCCCAGAAACCTTCAAGCAGGCAGTCAGGG 2108 Query 107854 CCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATG 107913 |||| | || |||||||| ||||||||||| || |||||| |||| | ||||| |||| Sbjct 2107 CCATCGTATCATGCTTCCCAAATGTCTTCATAGCTAGTAAGCTGGTGTCAGTGGTCTATG 2048 Query 107914 CCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAG 107973 | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 2047 CTTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCCG 1988 Query 107974 TGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 |||||||||| ||| ||||||| || || ||||||||||| ||||| ||||||||||| | Sbjct 1987 TGCCATGGAAATACCTACTGAACACCTGTGGGACAGACTTTCCCATCAAGACCAATGCTG 1928 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||||| |||||||||| | ||||| || |||||||||||||||| |||||||| Sbjct 1927 AGATGGTCCAGGCCCTCAAGCTATTGAATGGGCAGAACAGTATGGAGTCAGAGGTACCAC 1868 Query 108094 CTGAGTCCaaaaaaaaT--CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCC 108151 | | || |||| | ||||||||||| | ||||||||||| ||||||| || || Sbjct 1867 C--GGCACATAAAACGTTCCGCTGGAAATATCACTATGAGGTGAAAGACACATTGCACAT 1810 Query 108152 TACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 |||||||||| |||| ||||| ||| |||| || |||||||||| ||||||||||| Sbjct 1809 AACCAGCAAGAGGAAGACTCCTCCACCTAATAACATAACCATGTTCACTGGGAATGCCTA 1750 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACT 108271 | ||||| ||||||| ||| | ||||||| ||| ||||| | ||| ||||| ||| Sbjct 1749 CATGGTGGCTTCTCGAGACTTCATTGAACATGTGTTAAACAACTCCAAAGCCCAACAACT 1690 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 | |||||||| |||||||||||||| || || || ||||| ||||||||||| ||||| Sbjct 1689 AATCGAATGGGTAAAAGACACCTATAGTCCTGATGAGCACCTTTGGGCCACCCTCCAGCG 1630 Query 108332 TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || | ||||||||||| || | ||| |||||||| | | || | |||||||||| Sbjct 1629 AGCCTCATGGATGCCTGGATCAGCTCCCTTGCACCCCAAATTTGACCTTTCAGACATGAG 1570 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC-AGCATGGGGGCGC 108450 | || || ||||| |||||||||| ||| |||||||| || || || ||||| | Sbjct 1569 ATCTATTGCAAGGCTAACCAAGTGGCAGAGCCATGAGGGAGACATCGAGAAT-GGGGCTC 1511 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 |||| | || ||||| || ||||| | | |||| |||| ||||| ||| | ||||||| Sbjct 1510 CTTACACGCCTTGCTCAGGCATCCACCAGCGGGCTGTCTGTATTTATGGGTCTGGGGACC 1451 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATG 108570 || ||||||| || ||||||||||| |||||||| ||||| |||||||| | |||||||| Sbjct 1450 TGCACTGGATACTTCAGAACCATCATCTCTTGGCCAACAAATTTGACCCAAAGGTGGATG 1391 Query 108571 ATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAAC 108630 |||||||||| ||||| ||||||||||| ||||||| || |||||||| ||||| |||| Sbjct 1390 ATAACGTCCTTCAGTGTTTAGAAGAGTATTTACGTCACAAAGCCATCTACGGGACAGAAC 1331 Query 108631 TTTGA 108635 | ||| Sbjct 1330 TGTGA 1326 >seq1430035 Length=6032 Score = 136 bits (150), Expect = 3e-27 Identities = 238/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||||||| ||| ||| || ||||| || || || ||||| || | ||| Sbjct 4032 CCCCTTAGCAAAGAAGAGGTAGGCTTTCCAATTGCGTATTCCATAGTGGTTCACCACAAG 3973 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| || Sbjct 3972 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATC 3913 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || | || | || || ||||| | || |||| |||||| Sbjct 3912 CACGTGGACAAAAAAACTGAGGAATCCTTTTTAGCCGCGGTGATGGGCATTGCGTCCTGC 3853 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || ||||| ||||||| || ||| || |||||||| |||||| | Sbjct 3852 TTCGGTAACGTCTTTGTGGCCAGCCAGCTGGAGAATGTTGTTTATGCATCCTGGAGTCGG 3793 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| |||||||| || |||||| | ||| || | ||| | | ||||| | ||||||| Sbjct 3792 GTGCAGGCTGACCTCAATTGTATGAAGGACCTG-TACAG-GATGAGTGCAAGCTGGAAGT 3735 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 |||| | ||| || || | |||||||| || || ||||| Sbjct 3734 ACTTGATCAATCTTTGTGGTATGGACTTCCCTATCAAAACCAA 3692 >seq1007299 Length=1422 Score = 111 bits (122), Expect = 1e-19 Identities = 178/251 (71%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| |||| | |||||||| || |||||| |||| | ||| || ||||||| Sbjct 250 ATGCCCC--AGAATGTCTACTGTGTGCATGTGGATAGGAAGGCGACAGGTACCTTCAAAG 193 Query 107842 AGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 | || || || | ||| | ||| |||||||||| ||| ||||| |||| ||| Sbjct 192 ATGCCGTTCAG-CAGTTACTAAGCTGTTTCCCCAATGCCTTTATGGCTTCTAAGATGGAG 134 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 |||||||| |||| || ||| | | || |||||||||||||| ||| |||| || Sbjct 133 CCGGTGGTCTATGGTGGCTTCTCCCGCCTCCAGGCTGACCTGAACTGCATGAAAGATCTG 74 Query 107961 CTCCAGAGCTC---AGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 | || ||| || || |||||||| | || ||||| |||||| ||||||||| Sbjct 73 GT---GACCTCCAAGGTCCCCTGGAAGTATGTCCTCAATACCTGCGGGCAGGACTTCCCC 17 Query 108018 ATAAAGACCAA 108028 | || ||||| Sbjct 16 CTGAAAACCAA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342062759688672