Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1102849 134 2e-26 seq866491 105 8e-18 seq1424254 100 4e-16 seq1382252 98.7 1e-15 seq1304636 96.9 4e-15 seq790718 84.2 3e-11 seq856530 82.4 9e-11 >seq1102849 Length=1762 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 784 ACCTGGAATTCTCCCGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 843 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 844 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 903 Query 62508 CTATTTCTAAGACCGTA 62524 |||||||| | ||| || Sbjct 904 CTATTTCTTATACCATA 920 >seq866491 Length=1059 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 573 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 514 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || |||||||||||||| || || || || || ||||| || | | || | Sbjct 513 TTAACGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 454 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 |||| | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 453 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 403 >seq1424254 Length=5701 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || ||||| || || | || || ||||| | ||| || || || || || || ||| Sbjct 4951 TAAGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCATAA 4892 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 ||||| ||||||||||| | |||||| || || ||||| || || ||||||||||| Sbjct 4891 TAAATAGTTTCAAAGATTTGCTTATTCAGTAACTGGGCTTCAGGACTCTCAAATGGATAT 4832 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | | || || || || || |||| ||||| || ||||| || || || | ||| | Sbjct 4831 CTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGCGT 4772 Query 62808 TTATTAGA 62815 ||||| || Sbjct 4771 TTATTTGA 4764 >seq1382252 Length=4286 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | ||| | |||||||||| ||||||||||||| ||| Sbjct 3168 GTTACTTTCTATGATGTGTACCTGGTTCTGCAAGCTTTCACACTGACTACTGCAGTCTTT 3227 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 || | |||| | | ||||||||| ||||||||||| ||||| ||| ||| | |||| Sbjct 3228 CTGGGCTTGACCGCCTATACTCTACAGTCAAAGAGAGACTTCAGCAAATTTGGAGCAGG 3286 >seq1304636 Length=3081 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || || || || ||||| |||||||| || || ||||| | Sbjct 1881 CCTCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGGCCGGGCATCAGTCCCCGCTTCT 1822 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || || |||||||| || || || |||||||||| Sbjct 1821 TGAGCCAGAATATTGATGCAAAGGAGCCCGAGAAGAAGATCCCCTCCACGGCAGCAAAGG 1762 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 1761 CCACAACGCGCTCTCC 1746 >seq790718 Length=906 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||||||||||||||| ||||||||||| | ||||| ||||| || ||||||||||||| Sbjct 138 GCTCCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCGGCCAGCGTGCACA 79 Query 188233 TACGAATGG 188241 | || |||| Sbjct 78 TCCGCATGG 70 >seq856530 Length=1037 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 189 ACCTCTTCTGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGGG 130 Query 34140 TATTGGATTGGGAAAATAACAAA 34162 || |||||||| || || ||||| Sbjct 129 TACTGGATTGGAAAGATGACAAA 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618306675651840