Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq389637 147 3e-30 seq1382252 134 2e-26 seq1102849 131 2e-25 seq866491 105 9e-18 seq625382 102 1e-16 seq1424254 96.9 4e-15 seq790718 84.2 3e-11 seq856530 82.4 1e-10 >seq389637 Length=393 Score = 147 bits (162), Expect = 3e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9261 AGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCT 9320 || |||| |||||||||||| || |||| ||| | |||||| | ||||| ||||| ||| Sbjct 393 AGGTGCAGGAACAGATTGATAATGTCCAGGTAAAGATTGATGGCAGCTAATACATACTCT 334 Query 9321 TCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACA 9380 ||||| || ||||| || || |||||||| ||||| ||||| |||||||| ||||| | | Sbjct 333 TCAGGAGAAAGCTTGTGCATCAGTGAGTGTGTGTCGTAGATGATGAATCCACAGAAGAGA 274 Query 9381 AGGGCCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACT 9421 ||||| || | || | || ||||| ||||| ||||||||| Sbjct 273 AGGGCGCCTAGAGACGCCAAGACCAACTCCAGTGTTTCACT 233 >seq1382252 Length=4286 Score = 134 bits (148), Expect = 2e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| ||||||||||| || |||| | ||| Sbjct 3286 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGTAGAGTATAGGCGGTCAAGCCCAGA 3227 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| |||||||||||| ||| | | |||||||||||||||||| Sbjct 3226 AAGACTGCAGTAGTCAGTGTGAAAGCTTGCAGAACCAGGTACACATCATAGAAAGTAAC 3168 >seq1102849 Length=1762 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 784 ACCTGGAATTCTCCCGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 843 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 844 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 903 Query 65301 CTATTTCTAAGACCGTA 65317 |||||||| | ||| || Sbjct 904 CTATTTCTTATACCATA 920 >seq866491 Length=1059 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 573 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 514 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || |||||||||||||| || || || || || ||||| || | | || | Sbjct 513 TTAACGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 454 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 |||| | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 453 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 403 >seq625382 Length=644 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 457 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 398 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| | || || |||||||| |||| Sbjct 397 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 338 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 337 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 292 >seq1424254 Length=5701 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || || || || || | || || ||||| ||||| || || || || || || ||| Sbjct 4951 TAAGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCATAA 4892 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 ||||| ||||| ||||| | |||||| || || ||||| | || ||||||||||| Sbjct 4891 TAAATAGTTTCAAAGATTTGCTTATTCAGTAACTGGGCTTCAGGACTCTCAAATGGATAT 4832 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | || || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 4831 CTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGCGT 4772 Query 65601 TTATTAGA 65608 ||||| || Sbjct 4771 TTATTTGA 4764 >seq790718 Length=906 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| || ||||| ||||||| ||||||||||| ||||||| Sbjct 70 CCATGCGGATGTGCACGCTGGCCGAGGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 129 Query 9907 TGGAGGAGC 9915 ||||||||| Sbjct 130 TGGAGGAGC 138 >seq856530 Length=1037 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 189 ACCTCTTCTGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGGG 130 Query 36716 TATTGAATTGGAAAAATAACAAA 36738 || || |||||||| || ||||| Sbjct 129 TACTGGATTGGAAAGATGACAAA 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 646143639003520