Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1102849 122 1e-22 seq866491 111 2e-19 seq1424254 98.7 1e-15 seq856530 84.2 3e-11 >seq1102849 Length=1762 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 784 ACCTGGAATTCTCCCGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 843 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || || ||||| |||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 844 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 903 Query 79180 CTATTTCTAAGACCGTA 79196 |||||||| | ||| || Sbjct 904 CTATTTCTTATACCATA 920 >seq866491 Length=1059 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 573 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 514 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || |||||||||||||| || || || || || ||||| || | | || | Sbjct 513 TTAACGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 454 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 |||| | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 453 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 403 >seq1424254 Length=5701 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 ||| || ||||| || || | || | ||||| ||||| || || || || ||||| || Sbjct 4952 GTAAGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCATA 4893 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 |||||| ||||| || || | |||||| || || ||||| | || ||||||||||| Sbjct 4892 ATAAATAGTTTCAAAGATTTGCTTATTCAGTAACTGGGCTTCAGGACTCTCAAATGGATA 4833 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | | || || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 4832 TCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGCG 4773 Query 79479 CTTATTAGA 79487 ||||| || Sbjct 4772 TTTATTTGA 4764 >seq856530 Length=1037 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 190 TACCTCTTCTGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGG 131 Query 50517 ATATTGGATTGGGAAAATAACAAA 50540 || |||||||| || || ||||| Sbjct 130 GTACTGGATTGGAAAGATGACAAA 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705141288449920