Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1391428 96.9 3e-15 seq1023260 96.9 3e-15 >seq1391428 Length=4510 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 12970 TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCAT 13029 ||||| | |||||||||||| |||||||| || ||||||||||| ||| |||||||||| Sbjct 3618 TTCTACAAGCAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCAT 3677 Query 13030 TCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 ||| || | ||||||| |||||||||||||| Sbjct 3678 TCCAATGAGGCCGACAGGCAAGGCTTCTGTTAAAAA 3713 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||||||||| |||||| Sbjct 2719 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTCC 2778 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 2779 ATAAAATCAAAGGGATTTT 2797 >seq1023260 Length=1473 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||| || || || ||||||||||| || || || || ||||| || |||| || | Sbjct 215 CTTCATCCCTGCTGATCAGCTCGTTTGAGAAAGTGAGTCCTGGCATGAGGCCTCTCTTCT 156 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| ||||||||||||||||| || || || || || ||||| || || || || | Sbjct 155 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAATGCCTTCTACGGCAGCGAAGG 96 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 95 CCACCACTCTTTCCCC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423302429391456