Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14274 104 5e-17 seq357660 96.9 8e-15 seq1339586 91.5 3e-13 seq804204 89.7 1e-12 seq649457 89.7 1e-12 >seq14274 Length=203 Score = 104 bits (114), Expect = 5e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || ||||| ||||| | || ||||| || || || || Sbjct 22 GTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCC 81 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||| ||| || || || || || || ||||||||||| ||||| || || Sbjct 82 GCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 141 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || || || || || || ||||| || || || || Sbjct 142 ACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 201 Query 104543 TT 104544 || Sbjct 202 TT 203 >seq357660 Length=368 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || |||||||| | || || || ||| ||||||| |||||||| ||| | Sbjct 368 TTCCAGCTGCTTACCAGCAAAGAGCAGGCTGTGCTGACCAGGAGGAATTCCTTCCTTAAC 309 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| | ||| | |||||||||||||| | ||| ||||| ||||| || || || | Sbjct 308 CTGGAACTTGGTTTTTACATTTTCTATAGCATCTAAAGGTTTAACCTCAAGGGTGATGCT 249 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || ||| || |||| || |||||||| Sbjct 248 CTTCTCAATAAAAGTCTTTATGAAAATCTGCAT 216 >seq1339586 Length=3514 Score = 91.5 bits (100), Expect = 3e-13 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || | || ||| | ||| |||| ||| || ||||| ||| Sbjct 1351 GTGGACTCCTTTTGAATGTTGTTGTAAGACAAAGTATGTCCGTTTTCCAGCTGTTTACCA 1292 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||| | | |||||||| | ||||||||| |||||||| |||||||||||||| || ||| Sbjct 1291 ACAAGA-TCAGCCTCTGCTAATCAGGAGGCATTCCTTCCTTATCCTGAATCTTGGCCTTT 1233 Query 104483 ACATTTTCTA 104492 | | ||||| Sbjct 1232 GCGTCTTCTA 1223 >seq804204 Length=932 Score = 89.7 bits (98), Expect = 1e-12 Identities = 113/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG-GAGGTATTCCTTCTTTA 104464 |||| || || || ||||||||| ||||||||||| |||| | || || || || | Sbjct 195 CTTCCAGCTGCTTGCCAGCAAAACCCAGCCTCTGTTGGTCAGTGGGGGATGCCCGCTCTG 254 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 |||||||||||||| || | ||| | | ||| || || || || | ||| || | | Sbjct 255 TCCTGAATCTTTGCCTTGAAATTCTTGATGGTGTCACTGGGCTCGAGCTCCAGGTTGCTG 314 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 ||||||||| | | ||||| ||||| ||||||| Sbjct 315 GTCTTACCAATTAAGGTTTTCACAAAGATCTGCA 348 >seq649457 Length=677 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || |||||||| || || || | | ||| | || ||||| || || || || || Sbjct 584 GACTCTTTCTGGATGTTGTAATAGGGAAGATTGTGGCCATCTTCCAGCTGCTTGCCCACA 525 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || ||| || || || ||||| || || ||||||||||| ||||| || || ||| Sbjct 524 AAGATGAGCTGTTGATGGTCCGGAGGGATGCCCTCTTTATCCTGGATCTTGGCATTGACA 465 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| | ||| || || |||||||| ||||| | || ||||| Sbjct 464 TTTTCGATGGTGTCACTGGGTTCTACTTCTAGGATGATGGTCTT 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1129828660802624