Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq1252348 114 1e-20 seq1108254 95.1 1e-14 >seq1252348 Length=2602 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 10136 TTCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAA 10195 ||| |||| ||| |||| || || || | || |||||||||||||||||||||| |||| Sbjct 1105 TTCTAGGGTTACTTGGGTTGCCAAACCTTATCGGAAATGATCCAGTTTTACCTGGTGGAA 1046 Query 10196 GTAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGC 10255 || ||||| ||||| |||| || | ||| | ||| ||||| ||||||| ||||| Sbjct 1045 GTGATGCCCCAGGCAGAAAGCCATGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGA 986 Query 10256 GAGAATCTAAAGACCCTAAGG 10276 ||||| || |||||||| ||| Sbjct 985 GAGAAGCTGAAGACCCTCAGG 965 >seq1108254 Length=1785 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| ||||||| |||||| ||||| || || |||| | Sbjct 120 AGCTCCAAGAGAAAGGCGTCTACAAGGCCATGAATGAATTCGACATCTTCATCAACTGCA 179 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||||||||||||||| ||||| Sbjct 180 TAGAAGCATACATGACCATCAAAAT 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537374969313280