Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1406984 143 4e-29 seq1133617 120 4e-22 >seq1406984 Length=4975 Score = 143 bits (158), Expect = 4e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || | || || || ||| || ||||| || |||| || ||||| |||||| Sbjct 525 GTCTGGAATAACTGCTCATCGTCCCACTCAGGATGCTCCTGTTTAAGCACATCACACACT 466 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | |||||| |||| |||||||| ||||| |||||||| |||||||||||||| ||||| Sbjct 465 CGGTTGTGCTCCCGCAGCCAGATGGTAGCATACATCATCAGACCAGGCACCAGACCAAAG 406 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | | || || | | || || |||||||| | | Sbjct 405 ACCTCCTGCCCCACAGCGAACCGTAGGTGCTCAGGGATGTGAGGGGGGTAGATCATCTCC 346 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||| |||||||| | ||| || |||| ||| || ||||| Sbjct 345 ACCTGGGTGTCTTTGACTGTGGGAGGGTACACTTCTCCATCAAT 302 Score = 141 bits (156), Expect = 1e-28 Identities = 203/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || || || || || || || |||||| |||||||| || | ||| | || | |||| Sbjct 1973 AAAGGGCAGCCCTTCACATTATTACAGATGAGAGACTGAATTGAGGCAGTGTTAATGATC 1914 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| || || || || ||||| || |||||||| || || |||||| Sbjct 1913 TTAAAACCCACTTCCCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 1854 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || ||||| || || | ||| |||| || ||| Sbjct 1853 TTACCCATAAGTCCTTTCAAGGAGAATGGCGCCCCAAGTTCTACCATGGTCTCCCCAAAG 1794 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||| ||||||||||||| | | | |||| ||||| || |||||| Sbjct 1793 ATAGCATCAGGACGAGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 1734 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | | || ||||| ||||| || ||||||| Sbjct 1733 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCTTTCTCTCCTG 1688 >seq1133617 Length=1896 Score = 120 bits (132), Expect = 4e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| |||||| | || |||||| | ||| ||| | || Sbjct 1050 TCTTACCCCATGGCCCAGTCCTCGGGTGAAGCCAGGTCCTCGCTTCTGATCTGTCTTGAA 991 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || | |||||||||||| Sbjct 990 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTCGAGCCCTGGGGATC 931 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| |||| | |||| | |||| |||||||| ||| Sbjct 930 AGGAATGAACTTTCTCCTTAAAAGAACTTTTTCCAGAAC 892 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | |||||||| || || | || || || || || || | | Sbjct 357 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGCGGAAGGGCTCTGGTG 298 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || || ||||| |||||||| ||||||||| || ||| | |||| | | ||||| | Sbjct 297 TAGTATGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACATTGTAAGTT 238 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTG 10437 || || ||||||||||||| |||||| ||| Sbjct 237 GGTGGACTGTCAATCAAATGTGATCTAGCTG 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 695575375640320