Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq632106 150 3e-32 seq1170265 143 4e-30 seq12997 122 1e-23 seq707675 80.6 4e-11 >seq632106 Length=653 Score = 150 bits (166), Expect = 3e-32 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| || ||||| |||||||| || Sbjct 597 CGCCAAGCGGCACCGCAAAGTCCTACGGGATAACATCCAGGGCATCACAAAGCCAGCCAT 538 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 537 CCGGCGCTTGGCTCGGCGAGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 478 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | || | ||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 477 TCGCGGTGTCCTCAAAGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 418 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| |||||||| | || || || | || || || || Sbjct 417 GCACGCCAAGCGCAAGACGGTCACGGCCATGGATGTGGTTTACGCGCTCAAGCGCCAGGG 358 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | ||||| ||||| Sbjct 357 CCGCACTCTGTATGGCTTTGG 337 >seq1170265 Length=2077 Score = 143 bits (158), Expect = 4e-30 Identities = 191/263 (73%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | | || || || |||||||| || ||||||||||| || | Sbjct 1396 CGCCAAGCGCCACCGCA-AGGTATTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1338 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||| || || ||||| |||||||| |||| || | ||||||| |||| Sbjct 1337 TCCGCCGCTTGGCGCGACGCGGTGGTGTCAAGCGCATCTCCGGCCTCATCTATGAGGAGA 1278 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| ||||| | ||||| ||| ||| |||| || || | ||| || | Sbjct 1277 CCCGTGGTGTGCTGAAGGTGTTCCTTGAGAACGTGATCCGCGACGCCGTTACCTACACAG 1218 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| | |||||| | ||||| || | || || || | Sbjct 1217 AGCACGCCAAGCGCAAGACGGTCACCGCTATGGATGTAGTCTACGCGCTCAAGCGCCAGG 1158 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 |||| | | ||||| || ||| Sbjct 1157 GCCGCACCCTGTATGGCTTCGGA 1135 >seq12997 Length=203 Score = 122 bits (134), Expect = 1e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 ||||||||||| || ||||| || |||||||| ||||| ||||||||||| |||| || Sbjct 1 ATCACCAAGCCCGCCATCCGCCGCCTGGCTCGCCGTGGCGGAGTCAAGCGCATCTCCGGC 60 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 | |||| || |||| || | || ||||| | ||||| ||| ||| |||| || Sbjct 61 CTCATCTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGAC 120 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || ||| || |||||||| || || ||||| |||||| ||||||| | ||||| Sbjct 121 GCGGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTAC 180 Query 16655 GCATTGAAACGTCAAGGCCG 16674 || | || || || || || Sbjct 181 GCGCTCAAGCGCCAGGGACG 200 >seq707675 Length=764 Score = 80.6 bits (88), Expect = 4e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || |||||||| || ||||||||||| || | Sbjct 673 CGCCAAGCGGCACCGTAAGGTC-CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCA 731 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGC 16523 |||| || |||||||| ||||| |||||||||| Sbjct 732 TCCGCCGCCTGGCTCGCCGTGGCGGAGTCAAGC 764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 77738366134704