Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1102849 131 2e-25 seq1304636 105 8e-18 seq866491 105 8e-18 seq1424254 91.5 2e-13 >seq1102849 Length=1762 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 784 ACCTGGAATTCTCCCGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 843 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 844 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 903 Query 62457 CTATTTCTAAGACCGTA 62473 |||||||| | ||| || Sbjct 904 CTATTTCTTATACCATA 920 >seq1304636 Length=3081 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || || ||||| || ||||| |||||||| || || ||||| | Sbjct 1881 CCTCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGGCCGGGCATCAGTCCCCGCTTCT 1822 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || || |||||||| || || || |||||||||| Sbjct 1821 TGAGCCAGAATATTGATGCAAAGGAGCCCGAGAAGAAGATCCCCTCCACGGCAGCAAAGG 1762 Query 33446 CAATAAGTCTCTCTCC 33461 | | || | |||||| Sbjct 1761 CCACAACGCGCTCTCC 1746 >seq866491 Length=1059 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 573 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 514 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | || || |||||||||||||| || || || || || ||||| || | | || | Sbjct 513 TTAACGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 454 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 |||| | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 453 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 403 >seq1424254 Length=5701 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || || || || || | || || ||||| ||||| || || || || || || ||| Sbjct 4951 TAAGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCATAA 4892 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 ||||| ||||| ||||| | |||||| || || ||||| | || ||||||||||| Sbjct 4891 TAAATAGTTTCAAAGATTTGCTTATTCAGTAACTGGGCTTCAGGACTCTCAAATGGATAT 4832 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | || || || || || |||| ||||| || ||||| || || || | ||| | Sbjct 4831 CTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGCGT 4772 Query 62757 TTATTAGA 62764 ||||| || Sbjct 4771 TTATTTGA 4764 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 1915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 1856 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || || ||||| || ||||| | || ||||| | | || || | ||||| Sbjct 1855 CTGTTCTTCCTTCCCTGTGTTTTTTTTCAAGTCAAGGAATTCAAAGATGTCTAAGTGCCA 1796 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 1795 AGGCTCCAGGTAAATAGC 1778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611561843204480