Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1128521 109 4e-19 seq767867 93.3 3e-14 seq162880 86.0 4e-12 >seq1128521 Length=1873 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| | ||||||||||| |||||||| ||||| || | |||||| Sbjct 125 AAGCCCGTTCCCTTGACGGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAGTCTCGT 66 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||||||||||||||||||| Sbjct 65 TCATCCATTCATGCGTGTCACTAATTAGATGACGA 31 >seq767867 Length=865 Score = 93.3 bits (102), Expect = 3e-14 Identities = 70/80 (88%), Gaps = 3/80 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC-- 20004 |||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||| Sbjct 854 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTAATTGTTGACTATCGGTCTCAT 795 Query 20005 GC-GGTAATATTTAGCCTTA 20023 || ||| |||||||||||| Sbjct 794 GCTGGTGGTATTTAGCCTTA 775 >seq162880 Length=255 Score = 86.0 bits (94), Expect = 4e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 19957 AAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTT 20016 |||||||||||||||||||||| |||||||||||| |||||||||||| | ||||| Sbjct 255 AAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGTGCCGGTATTT 196 Query 20017 AGCCTTA 20023 ||||||| Sbjct 195 AGCCTTA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328978546404368