Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1102849 131 2e-25 seq866491 111 2e-19 seq625382 102 1e-16 seq1396778 100 4e-16 seq1424254 96.9 4e-15 seq856530 82.4 9e-11 >seq1102849 Length=1762 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 784 ACCTGGAATTCTCCCGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 843 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 844 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 903 Query 62312 CTATTTCTAAGACCGTA 62328 |||||||| | ||| || Sbjct 904 CTATTTCTTATACCATA 920 >seq866491 Length=1059 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 573 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 514 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | || || |||||||||||||| || || || || || ||||| || | || || | Sbjct 513 TTAACGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 454 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 |||| | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 453 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 403 >seq625382 Length=644 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 457 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 398 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| | || || |||||||| |||| Sbjct 397 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 338 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 337 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 292 >seq1396778 Length=4658 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | |||||||| || ||||||||||| || |||||||| || ||| Sbjct 2570 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 2629 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || ||||| || | || ||||| || |||||||| || | || | ||| ||| Sbjct 2630 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 2689 Query 63587 ATGTGCTGAGGTCTTTCA 63604 || ||||| ||||||||| Sbjct 2690 ATATGCTGTGGTCTTTCA 2707 >seq1424254 Length=5701 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 || || || || || || | || || ||||| ||||| || || || || || || ||| Sbjct 4951 TAAGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCATAA 4892 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 ||||| ||||| ||||| | |||||| || || ||||| | || ||||||||||| Sbjct 4891 TAAATAGTTTCAAAGATTTGCTTATTCAGTAACTGGGCTTCAGGACTCTCAAATGGATAT 4832 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | | || || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 4831 CTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGCGT 4772 Query 62612 TTATTAGA 62619 ||||| || Sbjct 4771 TTATTTGA 4764 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 1915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 1856 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || || ||||| || ||||| | || ||||| | | || || | ||||| Sbjct 1855 CTGTTCTTCCTTCCCTGTGTTTTTTTTCAAGTCAAGGAATTCAAAGATGTCTAAGTGCCA 1796 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 1795 AGGCTCCAGGTAAATAGC 1778 >seq856530 Length=1037 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 189 ACCTCTTCTGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGGG 130 Query 33219 TATTGAATTGGAAAAATAACAAA 33241 || || |||||||| || ||||| Sbjct 129 TACTGGATTGGAAAGATGACAAA 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622051361388800