Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1326125 95.1 2e-14 seq745873 86.0 1e-11 seq1123472 84.2 4e-11 >seq1326125 Length=3332 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 2615 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 2556 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 2555 TCCCGGCAGAGA 2544 >seq745873 Length=826 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142508 GGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCA 142567 ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| Sbjct 443 GGTTAGCTCAGTCAGTAGAGCGTGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCA 384 Query 142568 CATCGGG 142574 | | ||| Sbjct 383 CGTTGGG 377 >seq1123472 Length=1850 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570 |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| Sbjct 500 TAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTAGTGGGTTCGAGCCCCACAT 559 Query 142571 CGGGCA 142576 ||||| Sbjct 560 TGGGCA 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1008581803889648